Scaffold Ga0209535_1014253

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1014253
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4281
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001702	Metagenome	649	Y
F022525	Metagenome	214	Y
F064091	Metagenome	129	N
F087744	Metagenome	110	N
F101497	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_101425311	F101497	AGG	MTEKDRLIFRIKDLILKCRSRGKFKLAIQLKKKLDNL
Ga0209535_10142532	F022525	N/A	MKKTNQPKETMNINDLKITVKPKYNYGYKVGIIVHINGKKFPTERNHVYAHNKDNKAIITALIDGNYHNNHELCLSALKKEMNINA
Ga0209535_10142533	F001702	AGGA	MNKEQKQIKKVIDKAFSQLHVLSNITWTPYRDEIFNMNKKDEKRHRYNRPSSDFESSINDCAKMFTVKHIAESLLNVEKYKVKDLINIRKSALYSQSVVENYRDRIVEAWKNQDLKELASLDYIALIDWEHHKEQQARYKDIINK
Ga0209535_10142534	F087744	GAGG	MSKNILVTFDMQIGDYEHSDKYIFHNKTTDYKYCKQFWSLKKKNKLDENVYWDNHGLNAISVYSTQEITDQEVKTLKKLGVA
Ga0209535_10142536	F064091	AGGA	MTEYKKLELLHSQLDELIQGNQLPIDELKILQSFIEDIREKHLTNREEK