Scaffold Ga0209535_1012249

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1012249
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4733
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014448	Metagenome	263	Y
F020603	Metagenome	223	Y
F054348	Metagenome	140	N
F067117	Metagenome	126	N
F080239	Metagenome	115	N
F092711	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10122491	F020603	AGGAG	MINRLLLIIFCLLFVANCSSYKPLINPESSKDKHNGNVIAGNYWKDLQACRYIHSQNTGRIIKSLGISDETIFVKKCMNDYGYSILR
Ga0209535_101224910	F014448	AGGA	MAKAKDLNIYKIFSQTYNKSMFGFMNFEELKLIPKVKTVRQTTHKVSMGIHVDKFIKEKKLRLVVNNVS
Ga0209535_101224914	F054348	GGAGG	MSKSIIERVKYIKQKQISEIDRDQIEPIVYLNIFKANDTLYGFKEYDYFRNGDLKSKEWELGCYMNLQFIKKDVEEYNKQQITIIQRAKVVS
Ga0209535_10122492	F092711	GGAG	MVQLEVTLTGRSKSFTADTLQDCAKQFFDEYGEASEEVVKCQTFEVNNPAEFLIVGGNESCIGYLKQMQQGAINDK
Ga0209535_10122496	F067117	N/A	MNTKSKEKMKMLQIPVTEKQFDILKDKADKEKRSLPNSILIILEPHMKVK
Ga0209535_10122497	F080239	N/A	MNIKKMKMEQILNKFYSLKYLLESKSNIVYKKISGVINPPILDRWNWIVVIPQQFNRYANPCALLTVLVPPISIIKNYLLLIKNNIKKSLIIKKEKYEHQK