Scaffold Ga0209535_1007189

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1007189
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6631
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000918	Metagenome / Metatranscriptome	834	Y
F003647	Metagenome / Metatranscriptome	475	Y
F094605	Metagenome	106	N
F101868	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100718911	F101868	N/A	MEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPLDVEVDWDEVKSSDFTNKIRL
Ga0209535_100718918	F003647	N/A	MVMCEWTLADIKNRASNKAFAKVTILKLDIEDYKRSLINGTYGGITYEEAEQVLNGYKTELKVWNYITELIEKQ
Ga0209535_10071895	F094605	N/A	MTLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHATHIKVWNDIFDIPQLKDINDMMDRMS
Ga0209535_10071899	F000918	N/A	MYRQYQTNQQAWDEVTREFNESKRRTKICIEMFGQENLIGLNDEQRNLFWESI