Scaffold Ga0209535_1006465

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1006465
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7045
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003169	Metagenome / Metatranscriptome	504	Y
F003920	Metagenome / Metatranscriptome	462	Y
F049046	Metagenome / Metatranscriptome	147	N
F080233	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100646513	F003920	N/A	MLVRTVILYAVMTVCAVAFHEHTYAVWELREELQIRFMNMWELLDQLKYATAEQRVIVYAEIDHIRAEIQHIIDELIRLDKEQH
Ga0209535_100646514	F003169	AGG	MIKYPLYKKNNSRKNTLLYPGLTTVSFDRIITYMQYYYVLAYMGKHCYRHYVQLDPESADALHDVLVSRYDLVQVCAVKHSDVDPAILIAPAP
Ga0209535_10064652	F049046	GGA	VYSEIQHDLKNLFGVDEVINISNMGGSPDRQIRGVIEWTAQNGKPDMVIVPVSFAHRFELPISERSDPLHNKHYKCLWHMDLGKNYGSNNPIDPKYDRSILETYMKTGAVIHSNDHPGHDNLWAKLITFQAYLELNKIRHLIFDTGNYYENVPNLDQPGMKKKKLIEDCKGIYKFFTFCSNVWMYQQLTDKEKIKYVPWYKPKRNKPVGKILSPEELTIVHHNKHQVLKLMNYLVEQGAVRTP
Ga0209535_10064654	F080233	N/A	MFYIWHTLIIATFIAVAYHLGYQHGAKKIKVTQSTRKK