Scaffold Ga0209535_1001808

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1001808
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14219
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (67.74%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002594	Metagenome / Metatranscriptome	545	Y
F004220	Metagenome	448	Y
F011527	Metagenome	290	Y
F024421	Metagenome	206	Y
F026714	Metagenome	197	N
F055205	Metagenome	139	Y
F098074	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10018081	F026714	AGGAG	MADKYKKLTIYVSEEQEKVLKDFNDTIIKKEQFPLLHYTVGIISKRLAETNNRMITDVDPNTCDTSTLYLNSQTIE
Ga0209535_100180810	F011527	N/A	MLVYFQFRRCGYYAKGLVEADSLDAASKALWAEHVGTFKWEDQTNDMPENANCLTIEEYKYERSSDGKTEPENEARSQVG
Ga0209535_100180815	F098074	AGGAG	MVDQTQEEILEVQTKNKQVKYAADTSKMFNEWLKKCPVVYYLSEQVDEEDHNKIIKYTFDKKVRRK
Ga0209535_100180823	F055205	AGGA	MNSLDLIKAERKQWREHSILHTIAVKKLSIELDTIRKQKDELQEKLNNINKISIIEDGKTNLADDQIKIK
Ga0209535_10018084	F004220	GGA	MVEKDKVDWCYYFKSIDRWIRVCTKDMNEGFSVFTKQTRVKEHYKKIADAGVEFYTCDDDDLDKEYGMYYGNLEFDPLDIMKSYSGHTKMFYKENGKWQPL
Ga0209535_10018088	F002594	N/A	MAKIPISRLNSAPEEYQANEFNQLIEDLQNIVTILNSTYPKEQNDERERQVWFLGG
Ga0209535_10018089	F024421	AGGAG	MSEALMEKLNQKMKLEAKWASELLSNGAVTVEMAKISKEVKVVEREIKEEVEHK