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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025120 Open in IMG/M |
| Scaffold ID | Ga0209535_1001234 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-28 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17557 |
| Total Scaffold Genes | 34 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (91.18%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 48.9699 | Long. (o) | -130.6666 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002430 | Metagenome / Metatranscriptome | 560 | Y |
| F016061 | Metagenome | 250 | Y |
| F028350 | Metagenome / Metatranscriptome | 192 | Y |
| F049286 | Metagenome / Metatranscriptome | 147 | Y |
| F060432 | Metagenome / Metatranscriptome | 133 | Y |
| F067203 | Metagenome / Metatranscriptome | 126 | Y |
| F079995 | Metagenome / Metatranscriptome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209535_100123413 | F067203 | GGAG | MTMTWKNIEASGVSEKDKQYMVMYGCTQDDMVAMMNEPMNFIGGHYMLAMSILSDAQECIARGNNNTARQYINKAKYVMREWRDMDL |
| Ga0209535_100123414 | F079995 | AGGAG | MRHFISHWELQDNTSNVWRSINCNNGSAEIIKNMGCWMLEIRFNTGRFHVSSHNTRDEAIRQAETQAAWNVEFV |
| Ga0209535_100123416 | F028350 | GGAG | MIKRSGRVNPIAKALLQTDRRRSQVVPDKTKYNRKKDKDNANQNYTDEKHKDN |
| Ga0209535_100123418 | F016061 | AGGAG | MSYIKVKATNIAIKAHNLVYRGKQMKPSIDRTNDVHFNKMGKYYVGPSEKGKFLQVNDGYRVKYYGNPFHNLYRIVSKQGTDYVIHQAK |
| Ga0209535_100123419 | F049286 | AGGAG | MPKYEVTRSYTVVCVATVEADTHDHAEEIACDSGDIHWKEYDGDYDTEVYVEEIDA |
| Ga0209535_100123421 | F060432 | AGGAG | MTYEITHEQRLVLLEAHNKLRTALSNVSECQDLWLSDIRNLEKLECDLHRIFKFVPEQDEQGRRMYYGDWILDEEDTDNDDA |
| Ga0209535_100123422 | F002430 | GAGG | MMTLNLPNKQVNAILVALDTEIDYTFDTHGRPDWETFPELAAMLMAYYTTRCKFEENQDE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |