Scaffold Ga0209535

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1001004 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025120 Open in IMG/M

Scaffold ID

Ga0209535_1001004 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19415
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (4.55%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

19415

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (4.55%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

48.9699

Long. (^o)

-130.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001217	Metagenome / Metatranscriptome	745	Y
F012788	Metagenome / Metatranscriptome	277	Y
F029758	Metagenome / Metatranscriptome	187	Y
F059342	Metagenome / Metatranscriptome	134	N
F093896	Metagenome / Metatranscriptome	106	Y
F103885	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100100417	F103885	N/A	MKTLLKQIKPKYVESIQSSDYTYSASRILAKLESTTFYGDLTITEIRDIYDMCGINALRVSAWDYRFGDNILLKDDE
Ga0209535_100100419	F059342	N/A	MSTTKYNGYTEFHTWRVFHDTLSDIDFESKVTADELKEISLGVVLSNFDMERGSHLVEEYAELFVKLADFEDIADSINNDIR
Ga0209535_100100420	F001217	N/A	MSATKFNGFEKYFIQTALRHAIEEAEENIIELEREGKRSIYAPGYFTMVGYEIIDKVNSMTLKKHQD
Ga0209535_100100425	F029758	N/A	MRTNDRLNAVEHIWRAESDRWIYIERYASGYLGLNCMQGDEYEHFKIKWCEIDRGMSEFYNCMRTELIRLRVGMSELEFIDKVMWIYFESKVNVERYK
Ga0209535_100100426	F029758	AGGAG	MIENDRLNAVEHIWYPESGRWIYIERYASGYLGLNCMQGDEYEYFKKHWCEIDRGMSEFYSTMKSDLIALRAQMSELEFIDKVMWIYWKSKMNAERYKLIRSLADNINE
Ga0209535_100100428	F093896	N/A	MNLTLSEKYLILVSLDHMEEHLFIIYEAGDITLDTFNLRMEVFKTAYNKIKKIC
Ga0209535_100100435	F012788	N/A	MQNKKIEILSTIDELNQYLNGNVTKTSLQITLQELIDKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209535_1001004

Overview

Ecosystem & Geography

Associated Families

Sequences