Scaffold Ga0209535

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1000792 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025120 Open in IMG/M

Scaffold ID

Ga0209535_1000792 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21964
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (83.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

21964

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (83.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

48.9699

Long. (^o)

-130.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014903	Metagenome / Metatranscriptome	259	Y
F026124	Metagenome	199	N
F038411	Metagenome / Metatranscriptome	166	N
F040922	Metagenome	161	N
F044149	Metagenome / Metatranscriptome	155	N
F085797	Metagenome / Metatranscriptome	111	N
F103900	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100079210	F038411	AGGAG	MTQHTDKVDQVRRRNRLDAWRKGVKFSMGESIDNGQDVKHTTIYNDDSQLIEYLKTDRKTETIPSPHSDDELVDVMFRGETATAEAILRKIAEENPS
Ga0209535_100079221	F026124	N/A	MIKLDKPALKESMADTFMGTAINLPLVWLVLTICLMFTQNALIISLAQAGLLTVVAIIRRYCTRMYFKRRESR
Ga0209535_100079223	F044149	GGA	MDNLDSITDPIEEVLHMMVKHQLAVVADKKLDLARTILRLQRQLTRTKETNKNFHEQWMYLHNTHEDIVGEVERVYGI
Ga0209535_100079227	F085797	AGGAG	MSRLGDFLIDVQSDSEFVISTCSSFEQFCSKMKDINSMYLPSSLSDIWEEHVGSMEGHNVNEHDRRAR
Ga0209535_10007923	F040922	GGA	VSNSCIIFYIGQDPEWRILIHTAESVKSFFLTIKTVGGYMIDLNFKLQRSFPPKRKVSTLQHGNIECYDIGDHYIFNTYLVDKMDMPDTRAPKLGRAVSDLHHAIAMCDDVHSDKLAKLTVGELLNLFGEAEELRTGF
Ga0209535_10007928	F014903	GAGG	MSEDITKIRHVEMTYDHTISFDIQEIANANNFAPGDIEAIECGKWAKLNIFLKDGRVIEEDGCFYGETDMKWASTENFYDKDYNEVAEDYSRRLYE
Ga0209535_10007929	F103900	N/A	MSSHRNQIILESLYQKYIDLGHEDAEALELAAKEFEENSY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209535_1000792

Overview

Ecosystem & Geography

Associated Families

Sequences