Scaffold Ga0209535_1000379

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000379
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31244
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (82.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028003	Metagenome / Metatranscriptome	193	Y
F059330	Metagenome	134	N
F077798	Metagenome	117	N
F081356	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100037928	F059330	N/A	MTNKQIIEKTKDWLWELTEPNEKFGGFGICPFLKKELTNDDMKFVIMKSIDGKAFKKGLDDWIDQNKYNSILFICLGDIWEHIGRKSYQASLQKIMKEHGYQDYKVLCFSPYEDKTAAGVKTRANAPYFLINIMDSEELGKAHKKMIDTKYFDNFTKDELIDIKIYGKKTKKALDINKKN
Ga0209535_100037931	F028003	AGG	MQVNQASGFDKYIIMCDKGQNKLTSDYPSYLKFKEVQDALVRISQTPGQTYMFGGEIHQKGMTCAQADRVLDNIFNCKTNMEMIGFIVKVARQIGFHEITPPRKIRWHQL
Ga0209535_100037932	F081356	GAGG	MASVIEGKYKVIQNYNSVEGALYEDEIVRVYDNNTRPGHLRAKDSMGRVWFVPKNYLKKI
Ga0209535_100037935	F077798	N/A	MTDIGKKFRMIIENEDLFKSNPEAMLRLKYLVDNKKSFKNIKKEEIEALYIYLNRHNIPQ