Metagenome / Metatranscriptome Family F081356

Basic Information
Family ID	F081356
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	62 residues
Representative Sequence	MGNVKEGKYKVVQDYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFIPKNYLKKI
Number of Associated Samples	102
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	81.42 %
% of genes near scaffold ends (potentially truncated)	29.82 %
% of genes from short scaffolds (< 2000 bps)	71.93 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (76.316 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (28.947 % of family members)
Environment Ontology (ENVO)	Unclassified (76.316 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (89.474 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110. 1BBAY94_101076061 2GBIDBA_100077416 3GOS2230_10393564 4JGI25132J35274_10012048 5JGI26238J51125_10175951 6Ga0075486_18250041 7Ga0098038_10979542 8Ga0098038_11017962 9Ga0098037_12701631 10Ga0098035_10656653 11Ga0098058_10860032 12Ga0098040_10580291 13Ga0098048_12339442 14Ga0098055_10072843 15Ga0075476_101637312 16Ga0066376_101480333 17Ga0098060_10456351 18Ga0098050_10436222 19Ga0098052_10191454 20Ga0102963_10919191 21Ga0114996_100755572 22Ga0115548_10870762 23Ga0115553_12523142 24Ga0114932_100645123 25Ga0115011_100130423 26Ga0115104_103269181 27Ga0115012_120595812 28Ga0098043_11308061 29Ga0098061_12498941 30Ga0098059_14172131 31Ga0151672_1630481 32Ga0151674_10539462 33Ga0151677_10378062 34Ga0160422_107234432 35Ga0163180_101646572 36Ga0163180_108340181 37Ga0163179_100064775 38Ga0180120_101666161 39Ga0181387_10183114 40Ga0181415_10440803 41Ga0181411_10037337 42Ga0181411_10347202 43Ga0181382_10241154 44Ga0181420_11772643 45Ga0181565_100511364 46Ga0181589_108944261 47Ga0181572_101084305 48Ga0181567_100902233 49Ga0206125_100094195 50Ga0206125_100225796 51Ga0181588_103462712 52Ga0206127_10790413 53Ga0206124_101146951 54Ga0211700_10076863 55Ga0211658_10018786 56Ga0211542_10156362 57Ga0211542_10175804 58Ga0211610_10548491 59Ga0211712_100046346 60Ga0211477_100951282 61Ga0211647_100784953 62Ga0211498_102773581 63Ga0211476_100063257 64Ga0211699_100227295 65Ga0211521_102335562 66Ga0211521_103423853 67Ga0211581_100860862 68Ga0211558_100500284 69Ga0211564_100703721 70Ga0211574_103184641 71Ga0211642_100624603 72Ga0211545_102680361 73Ga0211643_102041631 74Ga0211643_106700552 75Ga0211514_103680031 76Ga0211676_101095975 77Ga0211543_100049696 78Ga0211547_101307764 79Ga0211585_1000156921 80Ga0206126_1001244711 81Ga0213869_104016972 82Ga0222715_100047997 83Ga0212021_10400882 84Ga0255771_12898662 85Ga0244775_102112923 86Ga0208298_10316032 87Ga0208793_10443285 88Ga0209535_100037932 89Ga0209232_10153211 90Ga0209232_10834084 91Ga0209232_11921992 92Ga0209337_100171817 93Ga0209337_10486054 94Ga0209362_10055318 95Ga0208425_10321952 96Ga0209193_10068501 97Ga0208879_10684905 98Ga0208764_102533632 99Ga0209815_11867103 100Ga0209279_100946501 101Ga0209709_101477622 102Ga0209089_100569594 103Ga0209404_102502242 104Ga0183683_10308363 105Ga0183755_10051114 106Ga0183755_10550773 107Ga0302119_101624233 108Ga0315328_100262217 109Ga0315328_105986603 110Ga0315326_105496251 111Ga0310343_107497212 112Ga0315318_102888572 113Ga0315321_105754492 114Ga0310345_108061842
Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110. 1BBAY94_101076061 2GBIDBA_100077416 3Ga0098058_10860032 4Ga0098060_10456351 5Ga0115553_12523142 6Ga0211558_100500284 7Ga0211643_102041631 8Ga0209279_100946501 9Ga0302119_101624233 10Ga0315321_105754492
Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110. 1BBAY94_101076061 2GBIDBA_100077416 3Ga0098058_10860032 4Ga0098060_10456351 5Ga0115553_12523142 6Ga0211558_100500284 7Ga0211643_102041631 8Ga0209279_100946501 9Ga0302119_101624233 10Ga0315321_105754492
Powered by MSAViewer

Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 1.67% β-sheet: 33.33% Coil/Unstructured: 65.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
Powered by Feature Viewer

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF00011	HSP20	47.37
PF07728	AAA_5	15.79
PF10723	RepB-RCR_reg	2.63
PF08406	CbbQ_C	2.63
PF00535	Glycos_transf_2	0.88
PF03840	SecG	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	47.37
COG0714	MoxR-like ATPase	General function prediction only [R]	2.63
COG1314	Protein translocase subunit SecG	Intracellular trafficking, secretion, and vesicular transport [U]	0.88

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	23.68 %
Unclassified	root	N/A	76.32 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	10.53 %
Unclassified	root	N/A	76.32 %
Viruses	superkingdom	All Organisms → Viruses	13.16 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	9.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.16 %
Unclassified	root	N/A	76.32 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	2.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %
Unclassified	root	N/A	76.32 %
unclassified Archaea	no rank	All Organisms → cellular organisms → Archaea → unclassified Archaea	0.88 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	1.75 %

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	0.88 %
bacterium TMED198	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED198	1.75 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	2.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %
Unclassified	root	N/A	76.32 %

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	0.88 %
bacterium TMED198	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED198	1.75 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %
Unclassified	root	N/A	76.32 %

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	0.88 %
bacterium TMED198	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED198	1.75 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	2.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %
Unclassified	root	N/A	76.32 %

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	0.88 %
bacterium TMED198	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED198	1.75 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %
Unclassified	root	N/A	76.32 %

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	0.88 %
bacterium TMED198	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED198	1.75 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %
Unclassified	root	N/A	76.32 %

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	0.88 %
bacterium TMED198	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED198	1.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %
Unclassified	root	N/A	76.32 %
Xanthomarina	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina	2.63 %

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	0.88 %
bacterium TMED198	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED198	1.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %
Unclassified	root	N/A	76.32 %
Xanthomarina gelatinilytica	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	2.63 %

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000949\|BBAY94_10107606	Not Available	763	Open in IMG/M
3300001683\|GBIDBA_10007741	Not Available	17277	Open in IMG/M
3300001960\|GOS2230_1039356	All Organisms → Viruses → Predicted Viral	1664	Open in IMG/M
3300002483\|JGI25132J35274_1001204	Not Available	6842	Open in IMG/M
3300003478\|JGI26238J51125_1017595	All Organisms → Viruses → Predicted Viral	1784	Open in IMG/M
3300006425\|Ga0075486_1825004	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300006735\|Ga0098038_1097954	All Organisms → Viruses → Predicted Viral	1014	Open in IMG/M
3300006735\|Ga0098038_1101796	Not Available	990	Open in IMG/M
3300006737\|Ga0098037_1270163	Not Available	541	Open in IMG/M
3300006738\|Ga0098035_1065665	Not Available	1301	Open in IMG/M

Showing 1 to 10 of 113 entries

Previous1 2 3 4 5…12Next

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.12%
Host-Associated	Host-Associated	0.88%

Habitat	Taxonomy	Distribution
Algae	Host-Associated → Algae	0.88%
Aquatic	Environmental → Aquatic	99.12%

Habitat	Taxonomy	Distribution
Green Algae	Host-Associated → Algae → Green Algae	0.88%
Marine	Environmental → Aquatic → Marine	98.25%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.88%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	7.89%
Ectosymbionts	Host-Associated → Algae → Green Algae → Ectosymbionts	0.88%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	0.88%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	12.28%
Oceanic	Environmental → Aquatic → Marine → Oceanic	34.21%
Pelagic	Environmental → Aquatic → Marine → Pelagic	7.02%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.88%
Strait	Environmental → Aquatic → Marine → Strait	5.26%
Unclassified	Environmental → Aquatic → Marine → Unclassified	29.82%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.88%

Habitat	Taxonomy	Distribution
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	0.88%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	5.26%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	33.33%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	29.82%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	7.89%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	7.02%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	7.02%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	5.26%
Unclassified	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified	0.88%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.88%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.88%
Unclassified	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	3.51%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	0.88%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.88%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.88%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.88%
Hydrothermal Vent Plume	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume	0.88%
Macroalgal Surface	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface	0.88%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	28.95%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	28.07%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	2.63%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	2.63%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	2.63%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.88%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	5.26%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	5.26%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	4.39%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	4.39%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	2.63%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	1.75%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	0.88%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	0.88%

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000949	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY94	Host-Associated	Open in IMG/M
3300001683	Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly	Environmental	Open in IMG/M
3300001960	Marine microbial communities from South of Charleston, South Carolina, USA - GS014	Environmental	Open in IMG/M
3300002483	Marine viral communities from the Pacific Ocean - ETNP_6_30	Environmental	Open in IMG/M
3300003478	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA	Environmental	Open in IMG/M
3300006425	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006737	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG	Environmental	Open in IMG/M
3300006738	Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG	Environmental	Open in IMG/M
3300006750	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 102 entries

Previous1 2 3 4 5…11Next

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
BBAY94_101076061	3300000949	Macroalgal Surface	VKEGKYKVVQNYNSVEGALYENEIVQVYANNVKPGHLRAKDSMGRVWFIPKNYLKKM*
GBIDBA_100077416	3300001683	Hydrothermal Vent Plume	MLKVIEGKYKLVKDYTSIEGALYTNEVVNVYDNNTRPGHMRAKDNMGRVWFIPKKYLKKI
GOS2230_10393564	3300001960	Marine	MGNVKEGKYKVIQNYNSVEGALYENEVVQVYDNNTKPGHLRAKDSMGRVWFIPKNY*
JGI25132J35274_10012048	3300002483	Marine	MGNVKEGKYKVIQNYNSVEGALYENEVVQVYDNNTKPGHLRAKDSMGRVWFVPKNYLKKI
JGI26238J51125_10175951	3300003478	Marine	MASVREGKYKLVKDYASIEGALYTNEVVSVYDNNTRPGHMRAKDSMGRVWFIPQKYLKKI
Ga0075486_18250041	3300006425	Aqueous	GNVNEGKYKLTQDYTSVEGALYENEIVQVYANNVKPGHLRAKDSMGRVWFIPKNYLKKICFLK
Ga0098038_10979542	3300006735	Marine	MGNVKEGKYKVVQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFIPKNYLKKICFLK
Ga0098038_11017962	3300006735	Marine	MGNVKEGKYKVIQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFVPQKYLKKM
Ga0098037_12701631	3300006737	Marine	MGIVNEGKYKLTQDYTSVEGALYENEIVQVYANNVKPGHLRAKDSMGRVWFIPKNYLKKM
Ga0098035_10656653	3300006738	Marine	MAKIVEGKYKLIRDYASIEGALYTNEVVNVYDNNTRAGHFRAKDSMGRVWFIPKKYLKKI
Ga0098058_10860032	3300006750	Marine	MGKLIEGKYKVIQDYTSIEGALYKNEVVKVYDNNTRPGHIRAKDSMGRVWFIPKKYLKKICFLNFHYIYYKN*
Ga0098040_10580291	3300006751	Marine	KYKLIKDYASIEGALYTNEVVNVYDNNTRAGHFRAKDSMGRVWFIPKKYLKKI*
Ga0098048_12339442	3300006752	Marine	MGKLIEGKYKVIQDYTSIEGALYTNEVVKVYDNNTRPGHIRAKDSMGRVWFVPQKYLKKI
Ga0098055_10072843	3300006793	Marine	MGKLIEGKYKVIQDYTSIEGALYTNEVVKVYDNNTRPGHIRAKDSMGRVWFIPKKYLKKICFLNLHYIYYKN*
Ga0075476_101637312	3300006867	Aqueous	MGNVNEGKYKLTQDYTSVEGALYENEIVQVYANNVKPGHLRAKDSMGRVWFIPKNYLKKICFLK
Ga0066376_101480333	3300006900	Marine	MAIIVEGKYKLIRDYTSIEGALYTNEVVNVYDNNTRIDHFRAKDNMGRVWFIPKKYLKKI
Ga0098060_10456351	3300006921	Marine	RNDITGENKMGNVREGKYKVVQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFVPKNYLKKMCFLK
Ga0098050_10436222	3300006925	Marine	MGNVKEGKYKVVQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFIPKNYLKKMCFLK
Ga0098052_10191454	3300008050	Marine	MAKIVEGKYKLIKDYASIEGALYTNEVVNVYDNNTRVGHFRAKDSMGRVWFIPKKYLKKI
Ga0102963_10919191	3300009001	Pond Water	GENKMGNVNEGKYKLTQDYTSVEGALYENEIVQVYANNVKPGHLRAKDSMGRVWFIPKNYLKKI*
Ga0114996_100755572	3300009173	Marine	MGKLIEGKYKVIQDYTSIEGALYTNEVVNVYDNNTRPGHIRAKDNMGRVWFIPKKYLKKI
Ga0115548_10870762	3300009423	Pelagic Marine	MASVIEGKYKLVKDYTSIEGALYINEIVSVYDNNTRPGHMRAKDSMGRVRFIPQKYLKKI
Ga0115553_12523142	3300009445	Pelagic Marine	RFSPNDSTRENKMGIVNEGKYKLTQDYTSVEGALYENEIVQVYANNVKPGHLRAKDSMGRVWFIPKNYLKKI*
Ga0114932_100645123	3300009481	Deep Subsurface	MDKVIEGKYKLIKDYTSIEGALYTNEVVRVYDNNTKPGHKRAKDSMGRVWFIPEKYLKKM
Ga0115011_100130423	3300009593	Marine	MGKVIEGKYKVIQDYTSIEGALYKNEVVKVYDNNTRPGHIRAKDSMGRVWFVPQKYLKKI
Ga0115104_103269181	3300009677	Marine	EGKYKVIQNYNSVEGALYEDEIVRVYDNNTRPGHLRAKDSMGRVWFVPKNYLKKI*
Ga0115012_120595812	3300009790	Marine	GNVKEGKYKVIQNYNSVEGALYENEIVQVYANNVKPGHLRAKDSMGRVWFIPKNYLKKM*
Ga0098043_11308061	3300010148	Marine	MGNVKEGKYKVIQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWF
Ga0098061_12498941	3300010151	Marine	ENKMAKIVEGKYKLIKDYASIEGALYTNEVVNVYDNNTRAGHFRAKDSMGRVWFIPKKYLKKI*
Ga0098059_14172131	3300010153	Marine	YKLIRDYTSIEGALYTNEVVNVYENNTRPGHIRAKDSMGRVWFIPKKYLKKI*
Ga0151672_1630481	3300011129	Marine	MASVIAGEYKLVEDYTSIEGALYTNEIVSVYDNNRRPGHMRDKDTMGRVWFIPKKY
Ga0151674_10539462	3300011252	Marine	MASVIEGKYKLVEDYPSIEGALYTNEIVSVYDNNTRPGHMRAKDTMGRVWFIPKKYLKKIFFTVVL*
Ga0151677_10378062	3300011258	Marine	MRENINWPKDYTSVEGALYENEIVQVYANNVKPGHLRAKDCMGRVWFIPKNYLKKI*
Ga0160422_107234432	3300012919	Seawater	MGNVKEGKYKVVQDYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFIPKNYLKKI
Ga0163180_101646572	3300012952	Seawater	MGNVKDGKYKVIENYNSVEGALYVNEIVKVYDNNTKPEHLRAKDSMGRVCFIPKNYLKKI
Ga0163180_108340181	3300012952	Seawater	NRFSRNDITGENKMGNVREGKYKVVQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFVPQKYLKKM*
Ga0163179_100064775	3300012953	Seawater	MASVIEGKYKLIKDYTSIEGALYTNEVVKVYDNNTKPGHIRAKDSMGRVWFIPKKYLKKM
Ga0180120_101666161	3300017697	Freshwater To Marine Saline Gradient	MGIVNEGKYKLTQDYTSVEGALYENEIVQVYANNVNPGHLRAKDSMGRVWFIPKNYLKKI
Ga0181387_10183114	3300017709	Seawater	MASVIEGKYKLVEDYTSIEGALYTNEIVSVYDNNTRPGHMRAKDTMGRVWFIPKKYLK
Ga0181415_10440803	3300017732	Seawater	MASVIEGKYKLVKDYTSIEGALYINEIVSVYDNNTRPGHMRAKDSMGRVWFIPQK
Ga0181411_10037337	3300017755	Seawater	MGIVNEGKYKLTQDYTSVEGALYENEIVQVYANNVKPGHLRAKDSMGRVWFITKNYLKKI
Ga0181411_10347202	3300017755	Seawater	MASVIEGKYKLVKDYTSIEGALYINEIVSVYDNNTRPGHMRTKDSMGRVWFIPQKYLKKI
Ga0181382_10241154	3300017756	Seawater	MASVIEGKYKLVKDYTSIEGALYINEIVSVYDNNTRPGHMIAKDSMGRVWFIPQKYLKKI
Ga0181420_11772643	3300017757	Seawater	MASVIEGKYKVIQNYNSVEGALYVNEIVQVYDNNTKPGHLRAKDSMGRVWFIPKNYLKKI
Ga0181565_100511364	3300017818	Salt Marsh	MGNVKEGKYKVIQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFVPKNYLKKI
Ga0181589_108944261	3300017964	Salt Marsh	IAEENKMGNVKEGKYKVIQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFVPKNYLKKI
Ga0181572_101084305	3300018049	Salt Marsh	YKVIQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFVPKNYLKKI
Ga0181567_100902233	3300018418	Salt Marsh	MGNVKEGKYKVIQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFVPENYLKKI
Ga0206125_100094195	3300020165	Seawater	MASVIEGKYKLVKDYTSIEGALYINEIVSVYDNNTRPGHMRAKDSMGRVWFIPQKYLKKIXCFLNLHYIYYXKN
Ga0206125_100225796	3300020165	Seawater	MGIVNEGKYKLTQDYTSVEGALYENEIVQVYANNVKPGHLRAKDSMGRVWFIPKNYLKKI
Ga0181588_103462712	3300020168	Salt Marsh	GKYKVIQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFVPKNYLKKI
Ga0206127_10790413	3300020169	Seawater	MASVIEGKYKLVKDYTSIEGALYINEIVSVYDNNTRPGHMRAKDSMGRVWFIPQKYLKKI
Ga0206124_101146951	3300020175	Seawater	MGIVNEGKYKLTQDYTSVEGALYENEIVQVYANNVKPGHLRAKDSMGRVWFIP
Ga0211700_10076863	3300020251	Marine	MGNVNEGKYKVVQNYNSVEGALYENEVVQVYDNNTKPGHLRAKDSMGRVWFIPKNYLKKIXCFLRFHYIYYXKN
Ga0211658_10018786	3300020274	Marine	MGNVKEGKYKVVQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFIPKNYLKKI
Ga0211542_10156362	3300020312	Marine	MGKVVEGKYKLIKDYTSIEGALYTNEVVRVYDNNTKPGHIRAKDSMGRVWFIPEKYLKKMXCFLNLTYIYIXNKN
Ga0211542_10175804	3300020312	Marine	MGNVKEGKYKVVQNYNSVEGALYENEVVQVYDNNTKPGHLRAKDSMGRVWFIPKNYLKKI
Ga0211610_10548491	3300020359	Marine	MGKVIEGKYKLIKDYTSIEGALYTNEVVKVYDNNTKPGHIRAKDSMGRVWFIPEKYLKKM
Ga0211712_100046346	3300020360	Marine	MGNVKEGKYKVVQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFVPQKYLKKM
Ga0211477_100951282	3300020374	Marine	MGNVKEGKYKVVQNYNSIEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFVPQKYLKKM
Ga0211647_100784953	3300020377	Marine	MGNVKEGKYKVIQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFIPKNYLKKIXCFLNLHYIYM
Ga0211498_102773581	3300020380	Marine	MGNVKEGKYKVIQNYNSVEGALYENEVVQVYDNNTKPGHLRAKDSMGRVWFIPKN
Ga0211476_100063257	3300020381	Marine	MGNVKEGKYKVIQNYNSVEGALYENEVVQVYDNNTKPGHLRAKDSMGRVWFIPKNYLKKIXCFLNLHYIYIXNKN
Ga0211699_100227295	3300020410	Marine	MDKVIEGKYKLIKDYTSIEGALYTNEVVRVYDNNTKPGHKRAKDSMGRVWFIPEKYLKKMXCFLNLTYIYIXKKN
Ga0211521_102335562	3300020428	Marine	MGNVREGKYKVVQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFVPQKYLKKM
Ga0211521_103423853	3300020428	Marine	MDKVIEGKYKLIKDYTSIEGALYTNEVVNVYDNNTKPGHIRAKDSMGRVWFIPKKYLKK
Ga0211581_100860862	3300020429	Marine	MGNVKEGKYKVVQNYNSVEGALYENEIVKVYDNNTKPGHLRAKDSMGRVWFIPKNYLKKIXCFLNLHYIYIXKN
Ga0211558_100500284	3300020439	Marine	MGNVKEGKYKVIQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFIPKNYLKKIXCFLNLHYIYIXKRINIAQVRILMLDYNS
Ga0211564_100703721	3300020445	Marine	MGKLIEGKYKVIQDYTSIEGALYTNEVVKVYDNNTRPGHMRAKDSMGRVWFVPQKYLKKI
Ga0211574_103184641	3300020446	Marine	MGNVKEGKYKVVQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFVPKNYLKKM
Ga0211642_100624603	3300020449	Marine	MAKIVEGKYKLIKDYASIEGALYTNEVVNVYDNNTRAGHFRAKDSMGRVWFIPKKYLKKI
Ga0211545_102680361	3300020452	Marine	MASVIEGKYKLVEDYTSIEGALYINEIVSVYDNNTRPGHMRAKDSMGRVWFIPQKYLKKI
Ga0211643_102041631	3300020457	Marine	NSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFIPKNYLKKIXCFLNLHYIYM
Ga0211643_106700552	3300020457	Marine	MGKVIEGKYKLIKDYTSIEGALYKNEVVKVYDNNTRPGHMRAKDSMGRVWFVPQKYLKKI
Ga0211514_103680031	3300020459	Marine	MGNVKEGKYKVVQNYNSVEGALYENEIVQVYANNVKPGHLRAKDSMGRVWFVPQKYLKKI
Ga0211676_101095975	3300020463	Marine	MGNVREGKYKVVQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFIPKNYLKKI
Ga0211543_100049696	3300020470	Marine	MGKVVEGKYKLIKDYTSIEGALYTNEVVRVYDNNTKPGHIRAKDSMGRVWFIPEKYLKKM
Ga0211547_101307764	3300020474	Marine	MASVIEGKYKLIKDYTSIEGALYTNEVVKVYDNNTKPGHIRAKDSMGRVWFIPK
Ga0211585_1000156921	3300020477	Marine	MGKVIEGKYKLIKDYTSIEGALYTNEVVKVYDNNTKPGHIRAKDSMGRVWFIPEKYLKKMXCFLNLTYIYIXKKN
Ga0206126_1001244711	3300020595	Seawater	MASVIEGKYKLVKDYTSIEGALYINEIVSVYDNNTRPGHMRAKDSMGRVWFIPQKYLKKIXCFLK
Ga0213869_104016972	3300021375	Seawater	MGNVNEGKYKLTQDYTSVEGALYENEIVQVYANNVKPGHLRAKDSMGRVWFIPKNYLKKI
Ga0222715_100047997	3300021960	Estuarine Water	MGNVNEGKYKLTQDYTSVEGALYENEIVQVYANNVKPGHLRAKDSMGRVWFIPKNYLKKIXCFLK
Ga0212021_10400882	3300022068	Aqueous	MGNVNEGKYKLTKDYTSVEGALYENEIVQVYANNVKPGHLRAKDSMGRVWFIPKNYLKKI
Ga0255771_12898662	3300022900	Salt Marsh	MGNVKEGKYKVIQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFVPKNYLKKIXCF
Ga0244775_102112923	3300024346	Estuarine	MASVIEGKYKLVEDYTSIEGALYTNEIVSVYDNNTRPGHMRAKDSMGRVWFIPQKYLKKI
Ga0208298_10316032	3300025084	Marine	MGKLIEGKYKVIQDYTSIEGALYTNEVVKVYDNNTRPGHIRAKDSMGRVWFIPKKYLKKI
Ga0208793_10443285	3300025108	Marine	KLIEGKYKVIQDYTSIEGALYTNEVVKVYDNNTRPGHIRAKDSMGRVWFIPKKYLKKI
Ga0209535_100037932	3300025120	Marine	MASVIEGKYKVIQNYNSVEGALYEDEIVRVYDNNTRPGHLRAKDSMGRVWFVPKNYLKKI
Ga0209232_10153211	3300025132	Marine	KMGNVKEGKYKVIQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFIPKNYLKK
Ga0209232_10834084	3300025132	Marine	MGNVNEGKYKVIENYNSVEGALYVNEIVQVYDNNTKPGHLRAKDSMGRVWFIPKNYLKKI
Ga0209232_11921992	3300025132	Marine	MGNVKEGKYKVVQNYNSVEGALYENEIVQVYANNVKPGHLRAKDSMGRVWFIPKNYLKKI
Ga0209337_100171817	3300025168	Marine	MASVIEGKYKLVEDYTSIEGALYTNEIVSVYDNNTRPGHMRAKDTMGRVWFIPKKYLKKI
Ga0209337_10486054	3300025168	Marine	MGKLIEGKYKLVNDYVSIEGALYTNEIVNVYDNNTRPGHMRAKDTMGRVWFIPKKYLKKI
Ga0209362_10055318	3300025770	Marine	MASVREGKYKLVKDYASIEGALYTNEVVSVYDNNTRPGHMRAKDSMGRVWFIPQKYLKKIXCFLRLPYIYIXKN
Ga0208425_10321952	3300025803	Aqueous	MGNVNEGKYKLTKDYTSVEGALYENEIVQVYANNVKPGHLRAKDSMGRVWFIPKNYLKKIXCFLK
Ga0209193_10068501	3300025816	Pelagic Marine	MASVIEGKYKLVKDYTSIEGALYINEIVSVYDNNTRPGHMRAKDSMGRVWFIPQKYLKKIXCFLNL
Ga0208879_10684905	3300026253	Marine	IVKGKYKLIRDYTSVEGALYTNEVVNVYDNNTRIDHFRAKDNMGRVWFIPKKYLKKI
Ga0208764_102533632	3300026321	Marine	MGKLIEGKYKVIQDYTSIEGALYTNEVVKVYDNNTRPGHMRAKDSMGRVWFVPQKYLKKIXCFLKLHYIYYXKN
Ga0209815_11867103	3300027714	Marine	MAKLIEGKYKLVSDYTSIEGALYTNEVVNVYDNNTRPGHMRAKDNMGRVWFIPKKYLKKI
Ga0209279_100946501	3300027771	Marine	MASVREGKYKLVEDYASIEGALYINEVVSVYDNNTRPGHMRAKDSMGRVWF
Ga0209709_101477622	3300027779	Marine	MASVREGKYKLVKDYASIEGALYTNEVVSVYDNNTRPGHMRAKDTMGRVWFIPKKYLKKI
Ga0209089_100569594	3300027838	Marine	MSKAVEGKYKLVSDYTSIEGALYTNEVVNVYDNNTRPGHIRAKDNMGRVWFIPKKYLKKI
Ga0209404_102502242	3300027906	Marine	MGKVIEGKYKVIQDYTSIEGALYKNEVVKVYDNNTRPGHIRAKDSMGRVWFVPQKYLKKIXCFLNLHYIYYXKN
Ga0183683_10308363	3300029309	Marine	RENKMGNVREGKYKVVQNYNSVEGALYENEIVKVYDNNTKPGHLRAKDSMGRVWFIPKNYLKKIXCFLK
Ga0183755_10051114	3300029448	Marine	MGNVREGKYKVVQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFVPQKYLKKMXCFLK
Ga0183755_10550773	3300029448	Marine	MASVIEGKYKLIKDYTSIEGALYTNEVVRVYDNNTKPGHKRAKDSMGRVWFIPKKYLKKMXCFLNLTYIYIXKKN
Ga0302119_101624233	3300031606	Marine	YTSIEGALYTNEVVKVYDNNTRPGHIRAKDSMGRVWFIPQKYLRKIXCFLKLHYIYYXKNXYHSREDIGVRLQ
Ga0315328_100262217	3300031757	Seawater	MGKLIEGKYKVIQDYTSIEGALYTNEVVKVYDNNTRPGHIRAKDSMGRVWFIPQKYLKKI
Ga0315328_105986603	3300031757	Seawater	MAKIVEGKYKLIRDYTSIEGALYTNEVVNVYENNTRPGHIRAKDSMGRVWFIPKKYLKKI
Ga0315326_105496251	3300031775	Seawater	EGKYKLTQDYTSVEGALYENEIVQVYANNVKPGHLRAKDSMGRVWFIPKNYLKKIXCFLK
Ga0310343_107497212	3300031785	Seawater	MGNVKEGKYKVIQNYNSVEGALYENEVVQVYDNNTKPGHLRAKDSMGRVWFIPKNYLKKIXCFLNLHYIYIXKRINIAQVRMLMLDYNS
Ga0315318_102888572	3300031886	Seawater	MGKLIEGKYKVIQDYTSIEGALYTNEVVKVYDNNTRPGHIRAKDSMGRVWFIPQKYLKKIXCFLKLHYIYYXKN
Ga0315321_105754492	3300032088	Seawater	KVIQDYTSIEGALYTNEVVKVYDNNTRPGHIRAKDSMGRVWFIPQKYLKKI
Ga0310345_108061842	3300032278	Seawater	MAKIVEGKYKLIRDYTSIEGALYTNEVVNVYENNTRPGHIRAKDSMGRVWFIPKKYLKKIXCFLNLHYIYIXKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081356

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences