Scaffold Ga0209535

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1000181 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025120 Open in IMG/M

Scaffold ID

Ga0209535_1000181 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42650
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (81.82%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

42650

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (81.82%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

48.9699

Long. (^o)

-130.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003693	Metagenome / Metatranscriptome	473	Y
F012779	Metagenome / Metatranscriptome	277	Y
F019328	Metagenome / Metatranscriptome	230	Y
F036245	Metagenome / Metatranscriptome	170	N
F044516	Metagenome / Metatranscriptome	154	Y
F085553	Metagenome / Metatranscriptome	111	Y
F092017	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100018110	F003693	AGG	MISKLALIDVSADNNDSLGVQTDGMLLCGIQFPAAMTGSAITFDFAMDNSTWLDVKETDGTEVSYTVSAGDIVRVDPSGWAFASNGYLRVSSNGTEAADRKIVLHFRHS
Ga0209535_100018111	F092017	AGGAG	MGILLMLKEGRNLGIESIPDQPLEPSFPIVDPNNTANDGWFGLGAFGQAIFAAELVEEGA
Ga0209535_100018128	F036245	GAG	MGSTYKDSYKDRNSGEDMADLAMQKYLKDNDCVEYQDYLRIGTDPKENKLDLFWFATKVLLIPDYILVRKGYIFFIEVKGTNKLKEEDYFKIQEMAFKGTRFKEVKVGIMYFKTPDAEPVWVDHLKLRDYWIDPRIPMKHYPELDFQGNKKAYKELPL
Ga0209535_100018133	F019328	AGGAGG	MANIFDEPKLLKAWCIKLANACGGQKVEKSIVFTQLNTKRISELLDEFVADHNANTLKIAKEIQEEE
Ga0209535_100018143	F044516	AGGAGG	MCRDTGYYEPRQDVATKVVEEMFEKQNKSLMTYYLKMAYMDDQHTYMNDLYWVLQNKFKDVDLEAVKSHVEELLLIDDSDRELFDN
Ga0209535_100018147	F085553	AGAAGG	MKTIYKEPVASIDGYEYNEVLSVRNLNSTGSLRRVAGTRYDLIVSYNTPIAYVVDIENGTFLNETKVILCNDFYSITTRKHQAQVKDLYSMNAIGLFDLGGFLKRAEIDSVDVNGGVNGGTNTNWLHA
Ga0209535_10001818	F012779	GGA	MTEELNNSDTGEKNWKEMREKLNLYETKIAEYEGKERHEVFNKAGLDTTKGVGKAVEMMYEGDMTVEGIQQYASNEFGVEFGNQDRLQDTVQATEQSQDRLNNIQKNSVVDLYNEDVISQVREVEKSGNIRNSISAKLSVIEEAKKNSK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209535_1000181

Overview

Ecosystem & Geography

Associated Families

Sequences