Scaffold Ga0209535_1000122

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000122
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49247
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015734	Metagenome / Metatranscriptome	252	Y
F037986	Metagenome / Metatranscriptome	167	N
F047377	Metagenome / Metatranscriptome	150	Y
F050011	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100012253	F015734	AGG	MIIQRVALDSLLLKNVCEVRFARRRPQAGDSPARRMLCTKSYELLNSVNGRVTLNYAPPSGPKKINEAAENVLVVWDILMQDYRTINMNSCDLIQQIPDKDFWEYFNENIYPMSPEQKFNFMNS
Ga0209535_100012254	F050011	N/A	MNVSLENFSNHLKPYLLQDVAICTDRKIIRKGKLRIFQIKQHYARLTLEDEVRTRLYEIPYPFEITTRGSKTILCYKLSKLLNFGDLDLQVKFLDSSKKSKIYNENLYIMPLHEVDL
Ga0209535_100012262	F047377	N/A	MSKETKKTSTKDKIIKFIDAISGENYATANKYLQSAVQDKIESRIRQAAEKPLF
Ga0209535_100012263	F037986	N/A	MNKELLPTELQDALTEESVGTIETALKEKVELSVEAALTGQDELYAEKLEALINQIDKDHTVKMQQIVEAVDKNNASKLGNVIKKYETELNDSASIFKETLVESISNYIEEYIDEAVPMTSIEEATRNNTAMSVLNNLRSTLAVDSSLMAESVKTAIVDGKNEMDELKAEIAELKKTNVSLNENYNQAKAAAFLENRCAKFSGKKSAYLKKVLSDKSPRFIEENFEYTARLFDRKEKEQLEVIREEAISNRTVKADAPKTVVEEKAKPSVPANPYLEGLDLMK