Scaffold Ga0209349_1017313

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1017313
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2612
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006867	Metagenome / Metatranscriptome	363	Y
F022282	Metagenome	215	Y
F081210	Metagenome	114	N
F105878	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_10173132	F081210	AGG	MKPGDLVRQAPNIFADRKVAGKKMLVLKVMDGGPNRGEAVLTLLEGKERIWHYGELELWRESR
Ga0209349_10173134	F022282	N/A	MSNPFRFQLGDLVEFKKSQRMTEEYIDLVTLTGIVIKQRYVFTADNKFKVRTPDGDYWIRSDHLKLISSGTKNKT
Ga0209349_10173135	F006867	AGGA	MKQPPANINSEVQKRCHIQPGMLIKSTAGTELGKLALVVGISPACNFTQDYEGAEDHIFYKCEPFDGTPPFVDYVCNMEKVS
Ga0209349_10173138	F105878	AGGA	MKVGQIIKINKSGLAQFAPGIRAKLEGEIGLVIQEKYDLSHKLDLEKLPERVKVYPSLVKFDSLRSLNWMELDSVIVYPDQAEVLS