Basic Information | |
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Taxon OID | 3300025112 Open in IMG/M |
Scaffold ID | Ga0209349_1017313 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2612 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 18.92 | Long. (o) | -108.7999 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006867 | Metagenome / Metatranscriptome | 363 | Y |
F022282 | Metagenome | 215 | Y |
F081210 | Metagenome | 114 | N |
F105878 | Metagenome / Metatranscriptome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209349_10173132 | F081210 | AGG | MKPGDLVRQAPNIFADRKVAGKKMLVLKVMDGGPNRGEAVLTLLEGKERIWHYGELELWRESR |
Ga0209349_10173134 | F022282 | N/A | MSNPFRFQLGDLVEFKKSQRMTEEYIDLVTLTGIVIKQRYVFTADNKFKVRTPDGDYWIRSDHLKLISSGTKNKT |
Ga0209349_10173135 | F006867 | AGGA | MKQPPANINSEVQKRCHIQPGMLIKSTAGTELGKLALVVGISPACNFTQDYEGAEDHIFYKCEPFDGTPPFVDYVCNMEKVS |
Ga0209349_10173138 | F105878 | AGGA | MKVGQIIKINKSGLAQFAPGIRAKLEGEIGLVIQEKYDLSHKLDLEKLPERVKVYPSLVKFDSLRSLNWMELDSVIVYPDQAEVLS |
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