Scaffold Ga0209349_1001984

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1001984
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9926
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015346	Metagenome / Metatranscriptome	255	Y
F022282	Metagenome	215	Y
F081210	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_100198411	F022282	GAG	MDNQFRYQLGDLVEFKKTERTTEEYINLITLTGIVIEQRWVFTADNKFKVRTPDQDYWIRADHLTLLSSGTK
Ga0209349_100198417	F015346	N/A	MNPEYKSYKIGELVGVASNNVLGVITRSNYWALDEYLGGETEFVDVMWGAHESKQYPVQYLVKVK
Ga0209349_10019847	F081210	GGA	MKPGDLVKQAPNIFTDRKVAGKKMLVLKVMDGGPNRGETVLTLLEGKERLWHYGELELWRETR