NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209349_1001984

Scaffold Ga0209349_1001984


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1001984 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9926
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (88.46%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015346Metagenome / Metatranscriptome255Y
F022282Metagenome215Y
F081210Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0209349_100198411F022282GAGMDNQFRYQLGDLVEFKKTERTTEEYINLITLTGIVIEQRWVFTADNKFKVRTPDQDYWIRADHLTLLSSGTK
Ga0209349_100198417F015346N/AMNPEYKSYKIGELVGVASNNVLGVITRSNYWALDEYLGGETEFVDVMWGAHESKQYPVQYLVKVK
Ga0209349_10019847F081210GGAMKPGDLVKQAPNIFTDRKVAGKKMLVLKVMDGGPNRGETVLTLLEGKERLWHYGELELWRETR

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