Basic Information | |
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Taxon OID | 3300025112 Open in IMG/M |
Scaffold ID | Ga0209349_1001984 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9926 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (88.46%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 18.92 | Long. (o) | -108.7999 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F015346 | Metagenome / Metatranscriptome | 255 | Y |
F022282 | Metagenome | 215 | Y |
F081210 | Metagenome | 114 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209349_100198411 | F022282 | GAG | MDNQFRYQLGDLVEFKKTERTTEEYINLITLTGIVIEQRWVFTADNKFKVRTPDQDYWIRADHLTLLSSGTK |
Ga0209349_100198417 | F015346 | N/A | MNPEYKSYKIGELVGVASNNVLGVITRSNYWALDEYLGGETEFVDVMWGAHESKQYPVQYLVKVK |
Ga0209349_10019847 | F081210 | GGA | MKPGDLVKQAPNIFTDRKVAGKKMLVLKVMDGGPNRGETVLTLLEGKERLWHYGELELWRETR |
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