Scaffold Ga0209349_1000894

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1000894
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15001
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (89.19%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002310	Metagenome / Metatranscriptome	572	Y
F013821	Metagenome	268	Y
F067111	Metagenome	126	Y
F089039	Metagenome	109	Y
F093981	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_10008942	F067111	GGA	MEIKYLIKLIETLGVPLAVALCAGIALWKLIAFLLKDLKTDIAHQQDDLMRALSNNQTMIIKLIDRVRTLEINQMTAYTSLLTAANADLPDWRRTRAERIAELKEQIKDISHNGEETP
Ga0209349_100089433	F093981	GGA	MTTNSEARQASCRVTSGTALNVNGDWLAMCDAMGITTGTINERMMKFCNATLGATWDMASWDEVAWDGADGNLTNINEAMAKFAESNGVTGNGGMFSSMGSF
Ga0209349_100089434	F013821	GGAG	MATNQEARQAAIRAVTSTTGTHNEDWLALFTARSAPAGEYNERLLSYINTKLSTSYTNINDAMQALAANQSADNFSSMGTFTP
Ga0209349_100089435	F089039	AGGAG	MAKGFPNKMTRGQMGAYKGIQEAEYFRGGLNIQAGNELGFRSKGWRVKKGADKPGTFGMKLRRS
Ga0209349_100089437	F002310	GGAG	MNEIMVNADGTVTVVYEGSVSAILDDLVKANTTPAVYNADGSVKTEAIVPDADTLAQQITETDLKTHAWRLPKARADKLEVIRRDRNKKLADLDIEYQLADEGVHPDGLSKTQVAASKQALRDLPPTAESHLDGLNNTDDIEAYDPLAP