Scaffold Ga0208158_1085189

Overview

Basic Information

• Taxon OID: 3300025110
• Scaffold ID: Ga0208158_1085189
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 750
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.401
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085544	Metagenome / Metatranscriptome	111	Y
F092189	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208158_10851891	F085544	N/A	VQAGTNFTSANNEVAPKQRGLMLKRGQALFVAASGTTALTTGFYCNVQGGYY
Ga0208158_10851892	F092189	N/A	MPFGVGGFDNQKKLGFNNDFSKKLGADSFNVGKPKKTYENSEIKFYNTDSLWSRWRRGYELYTATQNFLGSTAKERDRRGDYRVYFTFQQFPGVFIPARIYTFPSVNQELGEHIVGMRDTDAFSFYDFGLPILAVRYLGNVVSATYSQTGTTVVVTKNDHGFFIGESVYLDIQTGGAVDETALITSKTQNTFTV