Metagenome / Metatranscriptome Family F085544

Overview

Basic Information

• Family ID: F085544
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 111
• Average Sequence Length: 45 residues
• Representative Sequence: NNEVAPKQRGLMLKRGQALYVAASGATALTTGFYCNVQGGYY
• Number of Associated Samples: 89
• Number of Associated Scaffolds: 111

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 21.62 %
• % of genes from short scaffolds (< 2000 bps): 16.22 %
• Associated GOLD sequencing projects: 82
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (77.477 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (19.820 % of family members)
• Environment Ontology (ENVO): Unclassified (64.865 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (70.270 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Fibrous
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 38.57%
  β-sheet: 0.00%
  Coil/Unstructured: 61.43%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.48 %
All Organisms	root	All Organisms	22.52 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.48 %
cellular organisms	root	All Organisms → cellular organisms	22.52 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.48 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	22.52 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.48 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	22.52 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.48 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	22.52 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.48 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	22.52 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.48 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	22.52 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.48 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	22.52 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001969|GOS2233_1018324	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1533
3300009481|Ga0114932_10050645	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2672
3300009790|Ga0115012_10887031	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	729
3300009790|Ga0115012_11289525	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	618
3300009790|Ga0115012_11678866	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	553
3300010148|Ga0098043_1002215	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	6930
3300012919|Ga0160422_10017859	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	4129
3300012919|Ga0160422_10668201	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	662
3300017731|Ga0181416_1144441	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	573
3300017732|Ga0181415_1007999	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2544
3300017746|Ga0181389_1153603	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	611
3300020436|Ga0211708_10069938	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1360
3300020436|Ga0211708_10288173	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	667
3300020445|Ga0211564_10438835	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	640
3300020452|Ga0211545_10087270	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1475
3300022198|Ga0196905_1041302	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1344
3300025110|Ga0208158_1018119	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1863
3300025110|Ga0208158_1085189	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	750
3300025151|Ga0209645_1036704	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1779
3300025151|Ga0209645_1156765	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	698
3300025151|Ga0209645_1178973	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	638
3300027906|Ga0209404_10022538	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	3469
3300029319|Ga0183748_1015051	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2976
3300031773|Ga0315332_10891235	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	534
3300032047|Ga0315330_10037509	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	3248

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.20%
Host-Associated	Host-Associated	1.80%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	97.30%
Terrestrial	Environmental → Terrestrial	0.90%
Porifera	Host-Associated → Porifera	0.90%
Plants	Host-Associated → Plants	0.90%

Category

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	75.68%
Freshwater	Environmental → Aquatic → Freshwater	18.92%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	2.70%
Soil	Environmental → Terrestrial → Soil	0.90%
Unclassified	Host-Associated → Porifera → Unclassified	0.90%
Leaf	Host-Associated → Plants → Leaf	0.90%

Type

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	26.13%
Oceanic	Environmental → Aquatic → Marine → Oceanic	25.23%
Unclassified	Environmental → Aquatic → Marine → Unclassified	12.61%
Lake	Environmental → Aquatic → Freshwater → Lake	11.71%
Strait	Environmental → Aquatic → Marine → Strait	6.31%
Lentic	Environmental → Aquatic → Freshwater → Lentic	4.50%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.70%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	1.80%
Volcanic	Environmental → Aquatic → Marine → Volcanic	1.80%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	1.80%
River	Environmental → Aquatic → Freshwater → River	0.90%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	0.90%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.90%
Clay	Environmental → Terrestrial → Soil → Clay	0.90%
Unclassified	Host-Associated → Porifera → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Leaf → Unclassified	0.90%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	26.13%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	20.72%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	12.61%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	7.21%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	6.31%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	4.50%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	3.60%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	2.70%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	1.80%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	1.80%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.90%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.90%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.90%
Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment	0.90%
Epilimnion	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion	0.90%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.90%
Unclassified	Host-Associated → Porifera → Unclassified → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Leaf → Unclassified → Unclassified	0.90%

Habitat

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	19.82%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	18.02%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	12.61%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	7.21%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	6.31%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	4.50%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	4.50%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	2.70%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	1.80%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.80%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	1.80%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	1.80%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	1.80%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	1.80%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	1.80%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	1.80%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.90%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.90%
Environmental And Host-Associated	Environmental → Aquatic → Marine → Oceanic → Unclassified → Environmental And Host-Associated	0.90%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	0.90%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.90%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.90%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	0.90%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment	0.90%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.90%
Marine Sponge (Stylissa Sp.)	Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Sponge (Stylissa Sp.)	0.90%
Estuary	Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary	0.90%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
2166559018	Marine microbial communities from the Atlantic Ocean, for comparison studies - Ocean6 (GOS4441574)	Environmental
3300001969	Marine microbial communities from Yucatan Channel, Mexico - GS017	Environmental
3300001971	Marine microbial communities from the Sargasso Sea - GS000c	Environmental
3300002231	Marine sediment microbial communities from Santorini caldera mats, Greece - red mat	Environmental
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental
3300003388	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN	Environmental
3300004112	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)	Environmental
3300005512	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water	Environmental
3300005606	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84	Environmental
3300005608	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84A	Environmental
3300006751	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG	Environmental
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental
3300007214	Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface layer) 9 sequencing projects	Environmental
3300007234	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA	Environmental
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental
3300007541	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG	Environmental
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental
3300007750	Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble', st44is 200bp-25jan2016	Host-Associated
3300007960	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG	Environmental
3300007973	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um	Environmental
3300008055	Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393	Host-Associated
3300008448	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs	Environmental
3300009481	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG	Environmental
3300009593	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome	Environmental
3300009790	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome	Environmental
3300010148	Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG	Environmental
3300010151	Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG	Environmental
3300010153	Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG	Environmental
3300010296	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA	Environmental
3300010299	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA	Environmental
3300010370	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNA	Environmental
3300012919	Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG	Environmental
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental
3300012954	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG	Environmental
3300013130 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2	Environmental
3300013188	Marine hypoxic microbial communities from the Gulf of Mexico, USA - 6m_Station1_GOM_Metagenome	Environmental
3300017697	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)	Environmental
3300017723	Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N	Environmental
3300017731	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16	Environmental
3300017732	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11	Environmental
3300017740	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13	Environmental
3300017746	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29	Environmental
3300017768	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 (version 2)	Environmental
3300017788	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L	Environmental
3300017989	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_2 metaG	Environmental
3300017990	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_S_2 metaG	Environmental
3300020160	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1	Environmental
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental
3300020183	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface	Environmental
3300020190	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surface	Environmental
3300020264	Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556116-ERR599158)	Environmental
3300020325	Marine microbial communities from Tara Oceans - TARA_B100000034 (ERX556073-ERR598966)	Environmental
3300020395	Marine microbial communities from Tara Oceans - TARA_B100000427 (ERX555987-ERR599133)	Environmental
3300020401	Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)	Environmental
3300020414	Marine microbial communities from Tara Oceans - TARA_B100000035 (ERX556019-ERR599028)	Environmental
3300020436	Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)	Environmental
3300020445	Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)	Environmental
3300020452	Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)	Environmental
3300020464	Marine microbial communities from Tara Oceans - TARA_B100000530 (ERX556075-ERR599101)	Environmental
3300020470	Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)	Environmental
3300021424	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015009 Mahale N1 surface	Environmental
3300022198	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)	Environmental
3300022200	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)	Environmental
3300023176	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG	Environmental
3300024344	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)	Environmental
3300025070	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)	Environmental
3300025102	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)	Environmental
3300025108	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)	Environmental
3300025110	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)	Environmental
3300025151	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)	Environmental
3300025646	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)	Environmental
3300025655	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)	Environmental
3300025769	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)	Environmental
3300025818	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes)	Environmental
3300026572	Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepB_8h (Metagenome Metatranscriptome)	Environmental
3300027906	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)	Environmental
3300027917	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)	Environmental
3300029318	Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289	Environmental
3300029319	Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516	Environmental
3300031565	Soil microbial communities from Risofladan, Vaasa, Finland - UN-2	Environmental
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental
3300031773	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915	Environmental
3300031784	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112	Environmental
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental
3300032047	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915	Environmental
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Ocean6-_01688610	2166559018	Environmental And Host-Associated	NFGSANNALAPKQRGLMLKRGQALYVAASGATALTNGFYCNVQGGFY
GOS2233_10183242	3300001969	Marine	FGSANNALAPKQRGLMLKRGQALYVAASGANALTNGFYCNVQGGFY*
GOS2215_101125092	3300001971	Marine	QRGLMLKRGQALYVAASGATALTNGFYCNVQGGFY*
KVRMV2_1000641641	3300002231	Marine Sediment	RGLMLKRGQALYVSVSGTAALTNGFYCNIQGGYY*
B570J40625_1001460691	3300002835	Freshwater	GANFSSTNSTVSPKIRGLMLQRGQALYVAASGATSLTNGFYAGVQAGYY*
B570J40625_1006782441	3300002835	Freshwater	SATSPKIRGMMLKRGQALYASYSGTTALTNGFYVTAQGGYY*
JGI25910J50241_100272882	3300003388	Freshwater Lake	ANFTSANSTTAPKLRGLTLQRGQSLYAAFSGATSLTNGFYVNVEAGYY*
Ga0065166_105026451	3300004112	Freshwater Lake	PVPHAGGNFGSATNEVAPKNRGLVIQRGQAIYAAVGGTTNLTSGFYVCAQGGYY*
Ga0074648_10431931	3300005512	Saline Water And Sediment	VPHAGANFVSANNEVSPKMRGLMLPRGTALYAAVSGTTALTNGFYVNVQAGYY*
Ga0066835_103603222	3300005606	Marine	RGLMLKRGQALYVATSGATALTNGFYCNVQGGFY*
Ga0066840_101019481	3300005608	Marine	NNALAPKQRGLMLKRGQALYVAASGANALTNGFYCNVQGGFY*
Ga0098040_10707322	3300006751	Marine	AQSGANVSSSNSNILPKQRGLMLQRGQALYCSVSGATALTNGFYCNVQAGYY*
Ga0070749_103093252	3300006802	Aqueous	PVVQAGSNFVTANNEVAPKQRGLILQRGQAIYAAVSGTTALTNGFYVNIQGGYY*
Ga0103959_12859872	3300007214	Freshwater Lake	ANFTSTNSTTSPKMRGLMLQRGQALYAAASGGTSLTNGFYVGVQGGYY*
Ga0075460_103245172	3300007234	Aqueous	MRGLMLQRGQALYAAVSGATSLANGFYVNVQAGYY*
Ga0099851_10426943	3300007538	Aqueous	EVSPKMRGLMLPRGTALYAAVSGTTALTNGFYVNIQAGYY*
Ga0099849_11362271	3300007539	Aqueous	MRGLMLPRGTALYAAVSGTVALTNGFYVNVQSGYY*
Ga0099849_12830413	3300007539	Aqueous	ANNEVAPKMRGLMLPRGTALYAAVSGTTALTNGFYVNVQAGYY*
Ga0099848_11904301	3300007541	Aqueous	PKIRGLVLQRGQALYAAVSGTTSLTNGFFINIQGGYY*
Ga0099846_11620361	3300007542	Aqueous	GSNFGSANNEVAPKMRGLMLPRGTALYAAVSGTTALTNGFYINIQAGYY*
Ga0099846_13378801	3300007542	Aqueous	VPHAGGNFGSATNEVAPKNRGLVIQRGQAIYAAVGGTTNLTSGFYVCAQGGYY*
Ga0105547_10496331	3300007750	Marine Sponge (Stylissa Sp.)	NEIAPKQRGLMLRRGQALYVAASGSTALTNGFYCNVQGGFY*
Ga0099850_14020212	3300007960	Aqueous	ANNEVAPKNRGLVLQRGQALYAAVSGTSALTGGFYVCLQGGYY*
Ga0105746_12489461	3300007973	Estuary Water	KMRGLVMERGQALYAAVSGTTALTNGFYVCVQGGFY*
Ga0108970_117492061	3300008055	Estuary	PVVQAGANFSSTNNEVAAKHRGLVLQRGQAIYAAVSGTTALTNGFYVNVQAGYY*
Ga0114876_11818031	3300008448	Freshwater Lake	GSNFVSANNEVSPKTRGLVMERGQALYATVSGTTALTSGFYVCVQGGFY*
Ga0114932_100506453	3300009481	Deep Subsurface	ANNEIAPKQRGLMLKRGQALYVAASGATALTNGFFCNLQGGFY*
Ga0115011_107636692	3300009593	Marine	EVAPKQRGIMLKRGQALYVASTGSTALTTGFYCNVQGGYY*
Ga0115012_108870311	3300009790	Marine	GSNFVSANNEVAPKQRGLMLKRGQALYVAASGATALTNGFYCNVQGGFY*
Ga0115012_112895251	3300009790	Marine	SANNEVAPKQRGLMLKRGQALYVSVSGTAALTNGFYCNIQGGYY*
Ga0115012_116788661	3300009790	Marine	VAPKQRGLMLKRGQALYVAASGSTALTTGFYCNVQGGYY*
Ga0098043_100221510	3300010148	Marine	GSNNEIAPKQRGLMLRRGQALYVAASGATALTNGFYCNVQGGFY*
Ga0098061_10353531	3300010151	Marine	APKQRGLMLKRGQALYVSVSGTSALTNGFYCNIQGGYY*
Ga0098059_13623381	3300010153	Marine	PVAQSGNNVSSSNSNILPKQRGLMLQRGQALYCSVGGAISLTNGFYCNVQAGYY*
Ga0129348_12107971	3300010296	Freshwater To Marine Saline Gradient	KMRGLMLKRGQALYAAASGATALTNGFYVNVQAGFY*
Ga0129348_12527553	3300010296	Freshwater To Marine Saline Gradient	NNEVSPKMRGLMLPRGTALYAAVSGTTALTNGFYVNVQAGYY*
Ga0129348_12611522	3300010296	Freshwater To Marine Saline Gradient	AATTTAPKMRGLMMRKGQSLYVAASGAVALTNGFYVNVQAGYY*
Ga0129342_10705881	3300010299	Freshwater To Marine Saline Gradient	PVPHAGANFGSANNEVAPKMRGLMLPRGTALYAAVSGTTALTNGFYVNVQAGYY*
Ga0129342_12548131	3300010299	Freshwater To Marine Saline Gradient	NFYSTNSTVAPKNRGLMLKRGQALYAAFSGATALTNGFYVTCQGGYY*
Ga0129336_104258801	3300010370	Freshwater To Marine Saline Gradient	NNEVAPKNRGLVLQKGQAIYVAAGGSTALTSGFYINAQGGFY*
Ga0129336_105767002	3300010370	Freshwater To Marine Saline Gradient	SNFGSANNEVAPKQRGLMLQRGQAIYAAVSGTTALTNGFYVNVQGGYY*
Ga0160422_100178596	3300012919	Seawater	SGALNFAGSNNEIAPKQRGLMLRRGQALFVAASGATALTNGFYCNVQGGFY*
Ga0160422_106682011	3300012919	Seawater	NEIAPKQRGLMLKRGQALYVAASGATALTNGFFCNVQGGFY*
Ga0163110_111730811	3300012928	Surface Seawater	NFGSGNNEIAPKQRGLMLKRGQALYVAARGATALTNGFFCNVQGGFY*
Ga0163111_125515211	3300012954	Surface Seawater	GSANSNKALKSRGLMLKRGQALYAAVSGSTALTNGFYVGVQGGFY*
(restricted) Ga0172363_105634112	3300013130	Sediment	ANSTTSPKIRGLILQRGQALYVATSGATALTGGFYVNIQSGYY*
Ga0116834_11042191	3300013188	Marine	GSNMGSANSNKALKSRGLMLKRGQALYAAVSGSTALTNGFYVGVQGGFY*
Ga0180120_103772602	3300017697	Freshwater To Marine Saline Gradient	PKMRGLMMRKGQSLYVAASGASALTNGFYVNVQAGYY
Ga0181362_10204252	3300017723	Freshwater Lake	FTSTNSTVSPKMRGLMLQRGQALYVSVSGTTSLTNGFYCNVQAGYY
Ga0181416_11444412	3300017731	Seawater	SGNNEVAPKQRGLMLKRGQALYVAASGSTALTTGFYCNVQGGYY
Ga0181415_10079991	3300017732	Seawater	PVVQSGAANFAGANNEIAPKQRGLMLKRGQALYVAASGATALTNGFFCNLQGGFY
Ga0181415_10562181	3300017732	Seawater	FTSANNEVAPKQRGLMLKRGQALYVAASGATALTTGFYCNVQGGFY
Ga0181418_10240902	3300017740	Seawater	MGSANSSKALKSRGLMLKRGQALYAAVSGATALTNGFYVGVQGGFY
Ga0181418_11308751	3300017740	Seawater	VQAGSNFVSANNEVAPKQRGLMLKRGQALYVAASGATALTNGFYCNVQGGFY
Ga0181389_11536031	3300017746	Seawater	NHPVVQAGTNMGSANSSKALKSRGLMLKRGQALYAAVSGATALTNGFYVGVQGGFY
Ga0187220_12503231	3300017768	Seawater	GSNFGSANNEIAPKQRGLMLKRGQALYVAASGATALTNGFYCNIQGGFY
Ga0169931_104935891	3300017788	Freshwater	AGANFTSANSKTSPKMRGLILQRGQALYVATSGATALTNGFYVNVQAGFY
Ga0180432_106332113	3300017989	Hypersaline Lake Sediment	SANNEVAPKMRGLMLPRGTALYAAVSGTTALTNGFYVNVQAGYY
Ga0180436_104369691	3300017990	Hypersaline Lake Sediment	PIPHAGANFVSTNNEVSPKMRGLMLPRGTALYAAVSGTTALTNGFYINVQGGYY
Ga0211733_101814922	3300020160	Freshwater	STGSGIAPKLLGLMLPRGASIYAAVSGAVSLTTGFYVNVQAGYY
Ga0211726_105873831	3300020161	Freshwater	ISPKMRGLMLQRGQALYVAASGSVALTNGFYVSVQGGYY
Ga0194115_102131113	3300020183	Freshwater Lake	NEVAPKTRGLVMERGQALYATVSGTTALTSGFYVCVQGGFY
Ga0194118_103131781	3300020190	Freshwater Lake	GSANNEVAPKTRGLVMERGQALYATVSGTTALTSGFYVCVQGGFY
Ga0211526_10293311	3300020264	Marine	HPVVQAGANFTGANSKVSPKLRGLMLNRGQALYAAASGASALTNGFYVGVQGGYY
Ga0211507_10615462	3300020325	Marine	PVVQAGANFTGANSKVSPKLRGLMLNRGQALYAAASGASALTNGFYVGVQGGYY
Ga0211705_101127151	3300020395	Marine	NNEVAPKQRGLMLKRGQALYVAASGATALTTGFYCNVQGGYY
Ga0211617_104035691	3300020401	Marine	APKQRGLMLRRGQALYVAASGATALTNGFYCNVQGGFY
Ga0211523_104574632	3300020414	Marine	KARGLMLKRGQALYAAASGASALTNGFYVGIQGGFY
Ga0211708_100699381	3300020436	Marine	HPTVQAGANFGSANNALAPKQRGLMLKRGQALYVAASGANALTNGFYCNVQGGFY
Ga0211708_102881731	3300020436	Marine	EIAPKQRGLMLRRGQALYVAASGATALTNGFYCNIQGGFY
Ga0211564_104388351	3300020445	Marine	PKQRGLMLKRGQALYVAASGTSALTTGFYCNVQGGYY
Ga0211545_100872701	3300020452	Marine	SANNEIAPKQRGLMLKRGQALYVAASGANALTNGFYCNVQGGFY
Ga0211694_104957611	3300020464	Marine	PTVQAGANFGSANNALAPKQRGLMLKRGQALYVAASGATALTNGFYCNVQGGFY
Ga0211543_102109601	3300020470	Marine	KQRGLMLSRGQALYVSVSGATALTNGFYCNVQGGYY
Ga0194117_101901003	3300021424	Freshwater Lake	NFGSANNEVAPKTRGLVMERGQALYATVSGTTALTSGFYVCVQGGFY
Ga0196905_10413022	3300022198	Aqueous	HPVVQAGSNFGSANNEVAPKQRGIMLQRGQAIYAAVSGTTALTNGFYVNVQGGYY
Ga0196901_10221363	3300022200	Aqueous	VQAGSAATTTAPKMRGLMMRKGQSLYVAASGASALTNGFYVNVQAGYY
Ga0196901_10231121	3300022200	Aqueous	AGSNFGSANNEVAPKMRGLMLPRGTALYAAVSGTTALTNGFYVNVQAGYY
Ga0196901_10588051	3300022200	Aqueous	NSTVAPKNRGLMLKRGQALYAAFSGATALTNGFYVTCQGGYY
Ga0196901_11273731	3300022200	Aqueous	INHPVAQTGANFTSANSTTSPKMRGMMLQRGQALYIAVSGGTSLTNGFYVGVQGGYY
Ga0196901_11925923	3300022200	Aqueous	NHPVPHAGANFSSNNNEVSPKMRGLMLPRGTALYAAVSGTVALTNGFYINVQSGYY
Ga0255772_101036872	3300023176	Salt Marsh	VSPKTRGLILQRGQALYAAVSGTTALTNGFYVNVQGGYY
Ga0209992_103578441	3300024344	Deep Subsurface	FAGANNEIAPKQRGLMLKRGQALYVAASGATALTNGFFCNLQGGFY
Ga0208667_10281391	3300025070	Marine	NSSKALKSRGLMLKRGQALYAAVSGSTALTNGFYVGVQGGFY
Ga0208666_10060726	3300025102	Marine	LTIPKHRGLMLRRGQALFVATSGATALTNAFYCNVQGGFY
Ga0208793_10659442	3300025108	Marine	NEIAPKQRGLMLKRGQALYVSASGTAALTNGFYCNVQGGYY
Ga0208158_10181192	3300025110	Marine	IAPKQRGLMLKRGQALYVSVSGTSALTNGFYCNVQGGYY
Ga0208158_10851891	3300025110	Marine	VQAGTNFTSANNEVAPKQRGLMLKRGQALFVAASGTTALTTGFYCNVQGGYY
Ga0209645_10311611	3300025151	Marine	QRGLMLKRGQALYVSVSGTAALTNGFYCNIQGGYY
Ga0209645_10367042	3300025151	Marine	NNEIAPKQRGLMLRRGQALYVAASGSTALTNGFYCNVQGGFY
Ga0209645_11567651	3300025151	Marine	SNNEIAPKQRGLMLRRGQALYVAASGATALTNGFYCNIQGGFY
Ga0209645_11789731	3300025151	Marine	NASLAPKQRGLMLKRGQALYVAASGATALTNGFYCNVQGGFY
Ga0208161_10382531	3300025646	Aqueous	APKNRGLMLKRGQALYAAFSGATALTNGFYVTCQGGYY
Ga0208795_10177333	3300025655	Aqueous	HAGANFSSNNNEVSPKMRGLMLPRGTALYAAVSGTVALTNGFYINVQSGYY
Ga0208795_10870641	3300025655	Aqueous	TAPKMRGLMLKRGQALYAAASGATALTNGFYVNVQAGFY
Ga0208767_10229235	3300025769	Aqueous	TNMGSANSSKALKSRGLMLKRGQALYAAVSGANALTNGFYVGVQGGFY
Ga0208542_10293553	3300025818	Aqueous	KMRGLILPRGSALYAAASGTTALTSGFYINVQGGYY
Ga0255270_10778351	3300026572	Freshwater	KMRGLVMERGQALYASVSGTNALTNGFYVCVQGGYY
Ga0209404_100225385	3300027906	Marine	VQSGAANWGSANNEIAPKQRGLMLKRGQALYVSASGTAALTNGFYCNVQGGYY
Ga0209536_1017313551	3300027917	Marine Sediment	IAPKMRGLILPRGSALYAAASGTTALTSGFYINVQGGYY
Ga0185543_10325731	3300029318	Marine	LRGLMLNRGQALYAAASGASALTNGFYVGVQGGYY
Ga0183748_10150514	3300029319	Marine	GALNFAGSNNEIAPKQRGLMLRRGQALYVAASGSTALTNGFYCNVQGGFY
Ga0307379_115689462	3300031565	Soil	APKMRGLMMRKGQSLYVAASGAVALTNGFYVNVQAGYY
Ga0315291_101012614	3300031707	Sediment	AGANFTSANSTTAPKLRGLTLQRGQSLYAAFSGATSLTNGFYVNVEAGYY
Ga0315907_104002412	3300031758	Freshwater	NFYTANSATAPKIRGMMLKRGQALYAAYSGTTALTNGFYVTAQGGYY
Ga0315332_108912352	3300031773	Seawater	AGNNFGSANNEIAPKQRGLMLKRGQSLYVAASGTTALTTGFYCNVQGGYY
Ga0315899_105361991	3300031784	Freshwater	PTVQAGSNFYTANSATAPKIRGMMLKRGQALYAAYSGTTALTNGFYVTAQGGYY
Ga0315290_111199331	3300031834	Sediment	ANFASTNSTTSPKMRGLMLQRGQAIYAAVSGPTSLTNGFYVGVQAGYY
Ga0315274_117934151	3300031999	Sediment	MRGLMLQRGQALYVSVSGTTSLTNGFYCNVQAGYY
Ga0315330_100375095	3300032047	Seawater	SNNEIAPKQRGLMLRRGQALYVAASGATALTNGFYCNVQGGFY
Ga0315287_128686841	3300032397	Sediment	PVVQSGANFTSTNSTTAAKMRGLMLQRGQALYVATGGSVSLSSGFYVNCQAAYY