Scaffold Ga0208863_1002558

Overview

Basic Information

• Taxon OID: 3300025107
• Scaffold ID: Ga0208863_1002558
• Source Dataset Name: Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection D3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9289
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location

• Location Name: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.534762
  • Long. (^o): -107.782602

Associated Families

Family	Category	Number of Sequences	3D Structure?
F105436	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208863_10025581	F105436	N/A	MKLVFVNVMQELRRFDSTAYITQPPVPLAILNGATPKEIETALLDEQADRLRFEGDAFAFSVSTQNARAVYEHADALRASGGDARERPCATLFPGGL