Scaffold Ga0209721_1006479

Overview

Basic Information

• Taxon OID: 3300025104
• Scaffold ID: Ga0209721_1006479
• Source Dataset Name: Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Tshipise hot spring metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4539
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: South Africa: Tshipise
• Coordinates
  • Lat. (^o): -22.6092
  • Long. (^o): 30.1749
  • Depth (m): 2 to 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012675	Metagenome / Metatranscriptome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209721_10064793	F012675	N/A	MTAIVSAGVAVSQHGGWYRCIAAYLLLPKLDDLLEVKKMGDAQNVVSVVQKLRNEALRESLGAFGIEVPARYVRTSSSTGRSRVRIPREQKQQLVENFLDALPTFEGLKEVLDSLPSNTNLTVKQIRSLVNRYLSIANRLQTQATQEEDTQE