Scaffold Ga0208011_1006688

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1006688
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3388
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F007827	Metagenome	344	Y
F017044	Metagenome	243	Y
F098227	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100668810	F017044	N/A	MQSIKHLKNDYVQLGNLIYKPHTICDLPPTFGAIDENGYSLVTEWFNYKGYTYLFDSVAK
Ga0208011_100668811	F007827	AGTAG	MKTTNKQKRSVRRRVELDQGVKPPGTRVFVSKKIYSRKIKHKKNE
Ga0208011_10066884	F098227	N/A	MYETLEHWKQYKQKQIAKAEMNKLINKLIAKNGITKY
Ga0208011_10066886	F000126	N/A	MRDFKITKNKGEWYYTTVTDSHGNKYDNWFEHAHEANNWIYYIWEKEEWFNSTSSQDLLANAVANLARIDEENNINKII