Scaffold Ga0208011_1005437

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1005437
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3824
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026439	Metagenome	198	Y
F057769	Metagenome / Metatranscriptome	136	Y
F083258	Metagenome	113	Y
F093834	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_10054372	F057769	AGGAG	MTIEIGSIVTNVGFIQGRNNSNHGLVISLLADGKIARVFWTSTQKSGFCSVVDLKVVA
Ga0208011_10054373	F026439	AGGAG	MASQLDTVLTFDQATEQFTDCILPMIQESEQRLGHVDIPARSEAWSNFVDALHANEEISDWQVANWEHPDCCND
Ga0208011_10054376	F093834	AGGAGG	MEFVIYMALVVLTTFVIIAINEVAKEVRGMRSVFETHYQLERVPIKSESAYKRKGVEL
Ga0208011_10054378	F083258	AGGAG	METLHTIDTPELTAKLNKSEIDILHFIDSWLPTLTDWSVDELTHKCRLFRSDADDAIDMLILHGLLDNAGSCEVTGRRVSVSALAAIWMRENRETINDLFIMNNTDLFEDIEIAEG