NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209616_1001826

Scaffold Ga0209616_1001826


Overview

Basic Information
Taxon OID3300025091 Open in IMG/M
Scaffold IDGa0209616_1001826 Open in IMG/M
Source Dataset NameFreshwater bacterial and archeal communities from Indian Creek, Illinois, USA - Floc-Cal metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4047
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: Indian Creek, Illinois
CoordinatesLat. (o)41.6655Long. (o)-87.5437Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012096Metagenome283Y
F016499Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0209616_10018263F012096AGGAGGMSTWLIGVIGVVYFAVAIDQFIKGGVGTGIMFLGYALGNVGLVMVAK
Ga0209616_10018265F016499AGGTGGVAAKKFKFTPDMAKTILDLGMQGASQKSMYAAINISKATAAKLKQDDPLFAETMDMATTYGQSFWEMMLLANIDNKAFNSRVAEIALRGQYPDDYKDNREVKATVKQEVTIDFNKEIGDLITALKT

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