Scaffold Ga0208157_1003386

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1003386
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6227
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F068825	Metagenome	124	Y
F091885	Metagenome	107	Y
F101876	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_10033862	F068825	N/A	MQTIKFLKPSLTTGKQKIKLNNITYKPYTICELANTKFGEVDEDGFSFITDWFNYKGFTYIAD
Ga0208157_10033863	F101876	AGGA	MEEIDDMLNTWIYNNIIREKLRELIIKETNKHKQNTNTKG
Ga0208157_10033866	F000126	N/A	MRDYSITRKKGEWYHAKVTDSYGNKYDNYFETASEANDWIYYVWEKEEWFNSTNSQELLANAIEECKRIDEEKGLTKII
Ga0208157_10033867	F091885	N/A	MNDITEVVVQKYLQEKLKKYQVYYNSSYQYGDYDMSDYYSARIKELKIKLSKLI