Metagenome Family F101876

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101876
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	36 residues
Representative Sequence	MKEIDEMLNRWIYNSIIREQLRKLIIKEINNEKV
Number of Associated Samples	65
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	19.61 %
% of genes near scaffold ends (potentially truncated)	11.76 %
% of genes from short scaffolds (< 2000 bps)	91.18 %
Associated GOLD sequencing projects	53
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.784 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (76.471 % of family members)
Environment Ontology (ENVO)	Unclassified (91.176 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (98.039 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.77% β-sheet: 0.00% Coil/Unstructured: 53.23%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF04545	Sigma70_r4	7.84
PF04542	Sigma70_r2	6.86
PF08279	HTH_11	5.88
PF04404	ERF	3.92
PF00118	Cpn60_TCP1	1.96
PF13479	AAA_24	1.96
PF03013	Pyr_excise	1.96
PF13671	AAA_33	0.98
PF06941	NT5C	0.98
PF00149	Metallophos	0.98
PF03851	UvdE	0.98
PF01068	DNA_ligase_A_M	0.98
PF12684	DUF3799	0.98
PF00462	Glutaredoxin	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	6.86
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	6.86
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	6.86
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	6.86
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	1.96
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.98
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.98
COG4294	UV DNA damage repair endonuclease	Replication, recombination and repair [L]	0.98
COG4502	5'(3')-deoxyribonucleotidase	Nucleotide transport and metabolism [F]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.78 %
All Organisms	root	All Organisms	39.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.78 %
Viruses	superkingdom	All Organisms → Viruses	31.37 %
cellular organisms	root	All Organisms → cellular organisms	7.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
unclassified viruses	clade	All Organisms → Viruses → unclassified viruses	9.80 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	7.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Virus NIOZ-UU157	species	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	9.80 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	2.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Virus NIOZ-UU157	species	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	9.80 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	2.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Virus NIOZ-UU157	species	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	9.80 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2.94 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Virus NIOZ-UU157	species	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	9.80 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	2.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Virus NIOZ-UU157	species	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	9.80 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Virus NIOZ-UU157	species	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	9.80 %
unclassified Flavobacteriales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales	2.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Virus NIOZ-UU157	species	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	9.80 %
Flavobacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001450\|JGI24006J15134_10084819	Not Available	1175	Open in IMG/M
3300001450\|JGI24006J15134_10085172	Not Available	1171	Open in IMG/M
3300001450\|JGI24006J15134_10099918	All Organisms → Viruses → Predicted Viral	1043	Open in IMG/M
3300001450\|JGI24006J15134_10113009	Not Available	953	Open in IMG/M
3300002760\|JGI25136J39404_1081429	Not Available	606	Open in IMG/M
3300005516\|Ga0066831_10063038	All Organisms → Viruses → Predicted Viral	1002	Open in IMG/M
3300006164\|Ga0075441_10210559	Not Available	722	Open in IMG/M
3300006190\|Ga0075446_10108609	Not Available	809	Open in IMG/M
3300006340\|Ga0068503_10389334	Not Available	1015	Open in IMG/M
3300006735\|Ga0098038_1022744	All Organisms → Viruses → Predicted Viral	2377	Open in IMG/M
3300006735\|Ga0098038_1086680	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	1092	Open in IMG/M
3300006736\|Ga0098033_1096656	Not Available	842	Open in IMG/M
3300006737\|Ga0098037_1039935	All Organisms → Viruses → Predicted Viral	1711	Open in IMG/M
3300006738\|Ga0098035_1302850	Not Available	520	Open in IMG/M
3300006750\|Ga0098058_1060216	Not Available	1059	Open in IMG/M
3300006750\|Ga0098058_1083354	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	875	Open in IMG/M
3300006750\|Ga0098058_1197278	Not Available	524	Open in IMG/M
3300006751\|Ga0098040_1007997	Not Available	3763	Open in IMG/M
3300006751\|Ga0098040_1258402	Not Available	504	Open in IMG/M
3300006752\|Ga0098048_1158064	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	674	Open in IMG/M
3300006752\|Ga0098048_1173609	Not Available	639	Open in IMG/M
3300006752\|Ga0098048_1178339	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	630	Open in IMG/M
3300006752\|Ga0098048_1188695	Not Available	610	Open in IMG/M
3300006753\|Ga0098039_1162723	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300006753\|Ga0098039_1309920	Not Available	527	Open in IMG/M
3300006754\|Ga0098044_1358498	Not Available	552	Open in IMG/M
3300006789\|Ga0098054_1128027	Not Available	943	Open in IMG/M
3300006789\|Ga0098054_1198933	Not Available	731	Open in IMG/M
3300006789\|Ga0098054_1294160	Not Available	581	Open in IMG/M
3300006793\|Ga0098055_1205854	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	747	Open in IMG/M
3300006900\|Ga0066376_10068233	All Organisms → Viruses → Predicted Viral	2249	Open in IMG/M
3300006921\|Ga0098060_1027778	All Organisms → cellular organisms → Bacteria	1734	Open in IMG/M
3300006921\|Ga0098060_1051038	Not Available	1223	Open in IMG/M
3300006923\|Ga0098053_1078474	Not Available	670	Open in IMG/M
3300006927\|Ga0098034_1216450	Not Available	532	Open in IMG/M
3300006928\|Ga0098041_1030769	All Organisms → Viruses → Predicted Viral	1749	Open in IMG/M
3300006928\|Ga0098041_1181203	Not Available	675	Open in IMG/M
3300006928\|Ga0098041_1240078	Not Available	578	Open in IMG/M
3300006929\|Ga0098036_1172920	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	658	Open in IMG/M
3300007962\|Ga0102907_1041520	Not Available	1261	Open in IMG/M
3300008050\|Ga0098052_1109948	Not Available	1117	Open in IMG/M
3300008050\|Ga0098052_1183497	Not Available	818	Open in IMG/M
3300008219\|Ga0114905_1225687	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	596	Open in IMG/M
3300009024\|Ga0102811_1062986	All Organisms → Viruses → Predicted Viral	1395	Open in IMG/M
3300009049\|Ga0102911_1151287	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	658	Open in IMG/M
3300009414\|Ga0114909_1189298	Not Available	527	Open in IMG/M
3300009481\|Ga0114932_10856210	Not Available	526	Open in IMG/M
3300009604\|Ga0114901_1124416	Not Available	792	Open in IMG/M
3300009790\|Ga0115012_11947083	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	519	Open in IMG/M
3300010149\|Ga0098049_1047875	Not Available	1367	Open in IMG/M
3300010149\|Ga0098049_1122612	Not Available	808	Open in IMG/M
3300010149\|Ga0098049_1165719	Not Available	681	Open in IMG/M
3300010151\|Ga0098061_1174556	Not Available	770	Open in IMG/M
3300010151\|Ga0098061_1313828	Not Available	538	Open in IMG/M
3300010151\|Ga0098061_1336057	Not Available	515	Open in IMG/M
3300010153\|Ga0098059_1096944	Not Available	1172	Open in IMG/M
3300010153\|Ga0098059_1364114	Not Available	548	Open in IMG/M
3300010153\|Ga0098059_1389852	Not Available	526	Open in IMG/M
3300010155\|Ga0098047_10060927	Not Available	1486	Open in IMG/M
3300010155\|Ga0098047_10147236	Not Available	911	Open in IMG/M
3300010155\|Ga0098047_10320621	Not Available	584	Open in IMG/M
3300010883\|Ga0133547_10778280	All Organisms → Viruses → Predicted Viral	1883	Open in IMG/M
3300010883\|Ga0133547_11721912	Not Available	1163	Open in IMG/M
3300014973\|Ga0134293_1038353	Not Available	567	Open in IMG/M
3300017715\|Ga0181370_1017742	Not Available	929	Open in IMG/M
3300017718\|Ga0181375_1058911	Not Available	634	Open in IMG/M
3300017760\|Ga0181408_1049567	All Organisms → Viruses → Predicted Viral	1125	Open in IMG/M
3300017764\|Ga0181385_1122923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	792	Open in IMG/M
3300017764\|Ga0181385_1146420	Not Available	718	Open in IMG/M
3300017770\|Ga0187217_1053916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1397	Open in IMG/M
3300017773\|Ga0181386_1056033	All Organisms → Viruses → Predicted Viral	1262	Open in IMG/M
3300017773\|Ga0181386_1139411	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	745	Open in IMG/M
3300017775\|Ga0181432_1298358	Not Available	511	Open in IMG/M
3300017779\|Ga0181395_1146738	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	744	Open in IMG/M
3300017783\|Ga0181379_1316459	Not Available	528	Open in IMG/M
3300021084\|Ga0206678_10577643	All Organisms → Viruses	510	Open in IMG/M
3300021959\|Ga0222716_10650338	Not Available	567	Open in IMG/M
3300025066\|Ga0208012_1002063	Not Available	4987	Open in IMG/M
3300025066\|Ga0208012_1013312	All Organisms → Viruses → Predicted Viral	1417	Open in IMG/M
3300025086\|Ga0208157_1003386	Not Available	6227	Open in IMG/M
3300025086\|Ga0208157_1045557	All Organisms → Viruses → Predicted Viral	1199	Open in IMG/M
3300025086\|Ga0208157_1139994	Not Available	542	Open in IMG/M
3300025096\|Ga0208011_1003416	Not Available	5038	Open in IMG/M
3300025096\|Ga0208011_1127756	Not Available	521	Open in IMG/M
3300025099\|Ga0208669_1097902	Not Available	614	Open in IMG/M
3300025102\|Ga0208666_1002177	Not Available	8256	Open in IMG/M
3300025118\|Ga0208790_1058045	All Organisms → Viruses → Predicted Viral	1200	Open in IMG/M
3300025128\|Ga0208919_1025272	All Organisms → Viruses → Predicted Viral	2191	Open in IMG/M
3300025128\|Ga0208919_1130723	All Organisms → Viruses	789	Open in IMG/M
3300025128\|Ga0208919_1231468	Not Available	543	Open in IMG/M
3300025128\|Ga0208919_1237026	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	534	Open in IMG/M
3300025132\|Ga0209232_1117623	Not Available	880	Open in IMG/M
3300025133\|Ga0208299_1114465	All Organisms → Viruses	892	Open in IMG/M
3300025151\|Ga0209645_1125482	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	810	Open in IMG/M
3300025168\|Ga0209337_1093760	All Organisms → cellular organisms → Bacteria	1418	Open in IMG/M
3300025168\|Ga0209337_1162827	All Organisms → Viruses	951	Open in IMG/M
3300025168\|Ga0209337_1230720	All Organisms → Viruses	725	Open in IMG/M
3300025873\|Ga0209757_10021949	All Organisms → Viruses → Predicted Viral	1776	Open in IMG/M
3300026253\|Ga0208879_1026620	All Organisms → Viruses → Predicted Viral	3156	Open in IMG/M
3300027714\|Ga0209815_1096200	All Organisms → Viruses	992	Open in IMG/M
3300027838\|Ga0209089_10545966	Not Available	619	Open in IMG/M
3300031647\|Ga0308012_10367171	Not Available	563	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	80.39%
Strait	Environmental → Aquatic → Marine → Strait	8.82%
Unclassified	Environmental → Aquatic → Marine → Unclassified	4.90%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	3.92%
Coastal	Environmental → Aquatic → Marine → Coastal	0.98%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	79.41%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	8.82%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	4.90%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.94%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	0.98%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	76.47%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	8.82%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	2.94%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	2.94%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	2.94%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	0.98%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.98%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	0.98%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.98%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.98%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300002760	Marine viral communities from the Pacific Ocean - ETNP_6_1000	Environmental	Open in IMG/M
3300005516	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF49B	Environmental	Open in IMG/M
3300006164	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA	Environmental	Open in IMG/M
3300006190	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA	Environmental	Open in IMG/M
3300006340	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006736	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG	Environmental	Open in IMG/M
3300006737	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG	Environmental	Open in IMG/M
3300006738	Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG	Environmental	Open in IMG/M
3300006750	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG	Environmental	Open in IMG/M
3300006751	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG	Environmental	Open in IMG/M
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental	Open in IMG/M
3300006753	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG	Environmental	Open in IMG/M
3300006754	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M
3300006793	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG	Environmental	Open in IMG/M
3300006900	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A	Environmental	Open in IMG/M
3300006921	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG	Environmental	Open in IMG/M
3300006923	Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG	Environmental	Open in IMG/M
3300006927	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG	Environmental	Open in IMG/M
3300006928	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG	Environmental	Open in IMG/M
3300006929	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG	Environmental	Open in IMG/M
3300007962	Estuarine microbial communities from the Columbia River estuary - metaG 1556B-02	Environmental	Open in IMG/M
3300008050	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG	Environmental	Open in IMG/M
3300008219	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05	Environmental	Open in IMG/M
3300009024	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705	Environmental	Open in IMG/M
3300009049	Estuarine microbial communities from the Columbia River estuary - metaG 1558A-02	Environmental	Open in IMG/M
3300009414	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906	Environmental	Open in IMG/M
3300009481	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG	Environmental	Open in IMG/M
3300009604	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16	Environmental	Open in IMG/M
3300009790	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome	Environmental	Open in IMG/M
3300010149	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG	Environmental	Open in IMG/M
3300010151	Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG	Environmental	Open in IMG/M
3300010153	Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG	Environmental	Open in IMG/M
3300010155	Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG	Environmental	Open in IMG/M
3300010883	western Arctic Ocean co-assembly	Environmental	Open in IMG/M
3300014973	Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0116 : 2 days incubation	Environmental	Open in IMG/M
3300017715	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_06 viral metaG	Environmental	Open in IMG/M
3300017718	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_11 viral metaG	Environmental	Open in IMG/M
3300017760	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16	Environmental	Open in IMG/M
3300017764	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11	Environmental	Open in IMG/M
3300017770	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)	Environmental	Open in IMG/M
3300017773	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24	Environmental	Open in IMG/M
3300017775	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17	Environmental	Open in IMG/M
3300017779	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16	Environmental	Open in IMG/M
3300017783	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10	Environmental	Open in IMG/M
3300021084	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300025066	Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025086	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)	Environmental	Open in IMG/M
3300025096	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)	Environmental	Open in IMG/M
3300025099	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)	Environmental	Open in IMG/M
3300025102	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025118	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)	Environmental	Open in IMG/M
3300025128	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)	Environmental	Open in IMG/M
3300025132	Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)	Environmental	Open in IMG/M
3300025133	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)	Environmental	Open in IMG/M
3300025151	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)	Environmental	Open in IMG/M
3300025168	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)	Environmental	Open in IMG/M
3300025873	Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)	Environmental	Open in IMG/M
3300026253	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A (SPAdes)	Environmental	Open in IMG/M
3300027714	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)	Environmental	Open in IMG/M
3300027838	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)	Environmental	Open in IMG/M
3300031647	Marine microbial communities from water near the shore, Antarctic Ocean - #179	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24006J15134_100848194	3300001450	Marine	MKEIDQMLEQWIHSSIIRAKLKELIIKAIKNASN*
JGI24006J15134_100851724	3300001450	Marine	MKEINQMLDQWIHSSIIRAKLKELIIKAIKNANNETP*
JGI24006J15134_100999182	3300001450	Marine	MKEIDDMLSTWIYNSIIREELRELIIKEINKNEKV*
JGI24006J15134_101130092	3300001450	Marine	MKEIDEMLDRWXTNTIIKKQLRKLIIKEINKNEKL*
JGI25136J39404_10814293	3300002760	Marine	MQEIDQMLDRWIYNTIIRDQLRKLIIKEIDKERLKKKNT*
Ga0066831_100630382	3300005516	Marine	MKEIDEMLEQWIHNSIIRIKLRKLIIKEINKHEKL*
Ga0075441_102105592	3300006164	Marine	MKEIDEMLDRWITNTIIKKQLRKLIIKEINNNEKL*
Ga0075446_101086092	3300006190	Marine	MKEIDEMLDRWITNTIIKEQLRKLIIKEINNNEKL*
Ga0068503_103893342	3300006340	Marine	MKEIDEMLERWIINTIIRKQLRELIIKEINKNEKV*
Ga0098038_10227445	3300006735	Marine	MVEIDEMLNRWIYNCIIREELRELIIKEINKNEKI*
Ga0098038_10866803	3300006735	Marine	MEEIDDMLNTWIYNNIIREKLRELIIKETNKHKQNTNTKG*
Ga0098033_10966562	3300006736	Marine	MKDIDEMLEKWIINTIIREQLRELIIKEINKHEKI*
Ga0098037_10399355	3300006737	Marine	MVEIDEMLNRWIYNCIIREELRELIIKEINKNEKV*
Ga0098035_13028502	3300006738	Marine	MKEIDIMLENWIYNSIIRKQLRNLIIKEINKNEKL*
Ga0098058_10602163	3300006750	Marine	MKDIDEMLEKWIINTIIREQLRELIIKEINKNDKEKLSNRY*
Ga0098058_10833542	3300006750	Marine	MKEIDQMLNRWIYNTIIRAQLRKLIIKEIDKERLKIKNK*
Ga0098058_11972782	3300006750	Marine	MKEINNMLETWIYNSIIREELRKLIIKEINKDEKV*
Ga0098040_10079973	3300006751	Marine	MKEIDEMLEQWIHNSIIRAKLRKLIIKEIMRYEKL*
Ga0098040_12584022	3300006751	Marine	MKEIDVMLEKWIRNSIIRKELRNLIIKEINKNEKV*
Ga0098048_11580642	3300006752	Marine	MKEIDEMLDQWVYNSIIRARLRKLIVYKIIENKNEKV*
Ga0098048_11736093	3300006752	Marine	MKEIDSMLETWIYNSIIREELRKLIIKEINKDEKV*
Ga0098048_11783393	3300006752	Marine	MKEIDDMLNTWIFNDIIREQLRKLIIKAINNENN*
Ga0098048_11886952	3300006752	Marine	MKEIDVMLEKWIRNSIIRNELRSLIIKEINKNEKL*
Ga0098039_11627232	3300006753	Marine	MKEIDIYLNQWIRNSIIRKQLRDLIIKEINKNEKL*
Ga0098039_13099201	3300006753	Marine	MKEIDIYLNQWIRNSIIREELRNLIIKEINKNEKV*
Ga0098044_13584983	3300006754	Marine	MVEIDEMLNRWVYNSIIREQLRELIIKEINKNEKV*
Ga0098054_11280272	3300006789	Marine	MKEIDEMLNRWIYNSIIREQLRKLIIKEINNEKV*
Ga0098054_11989332	3300006789	Marine	MKEIDNMLNAWIYNTIIRKQLRDLIIKEINKNEEI*
Ga0098054_12941601	3300006789	Marine	MVEIDEMLNRWIYNCIIREELRKLIIKEINKNEKV*
Ga0098055_12058542	3300006793	Marine	MKEIDEMLDQWVYNSIIRAKLRKLIVYKIIENKNEKV*
Ga0066376_100682334	3300006900	Marine	MEEIDEMLNKWIHNSIIREQLRKLIINKTNKNEKL*
Ga0098060_10277781	3300006921	Marine	MKEIDSMLKQWIYNSIIREQLRKLIIKEINKNEQKESN*
Ga0098060_10510382	3300006921	Marine	VKEIDDMLNKWIVNTIIKEQLRNLIIKEIKKHEIL*
Ga0098053_10784741	3300006923	Marine	MKEIDEMLERWIHNSIVRAKLRRLIIKEIMRYEKL*
Ga0098034_12164502	3300006927	Marine	MKQIDEMLNKWIHNDVVREQLRELIIKAIKNHEKV*
Ga0098041_10307697	3300006928	Marine	MKEIDDMLNTWIRNSIIRNKLRELIIKAIKNERD*
Ga0098041_11812033	3300006928	Marine	MKEIDNMLNTWIYNSIIREELRKLIIKEIKNGKENL*
Ga0098041_12400782	3300006928	Marine	MKEIDDMLNTWIYNSIIKKELRELIIKEINKNEKV*
Ga0098036_11729202	3300006929	Marine	MKEIDNMLNTWIYNSIIREELRKLIIKEIKDGKENL*
Ga0102907_10415203	3300007962	Estuarine	MKEIDQMLNQWITNSIIRKELRKLIVKEIKKNKL*
Ga0098052_11099482	3300008050	Marine	MKKIDEMLKIWIINSVVRKELRKLIIKEIKKHEIL*
Ga0098052_11834972	3300008050	Marine	MKEIDVMLEKWIRNSIIRKEIRNLIIKEINKNEKV*
Ga0114905_12256872	3300008219	Deep Ocean	MKEIDNMLSTWIYNSIIREELRKLIIKEIKDGKENL*
Ga0102811_10629864	3300009024	Estuarine	MKEIDEMLDRWIYNSIIRKQLRELIIKEINKNEKI*
Ga0102911_11512873	3300009049	Estuarine	LMKEIDQMLNQWITNSIIRKELRKLIVKEIKKNKL*
Ga0114909_11892982	3300009414	Deep Ocean	MKEIDEMLNTWIFNSIIRKKLRDLIIKEINKNEKV*
Ga0114932_108562102	3300009481	Deep Subsurface	MVEIDEMLNRWIYNCIVREELRELIIKEINKNEKV*
Ga0114901_11244162	3300009604	Deep Ocean	MKETDGMLNKWIYNSIIKKELRELIIKEINKNEKV*
Ga0115012_119470832	3300009790	Marine	MNEYKYMKEIDNMLETWIYNSIIREELRRLIIKEIKDGKENL*
Ga0098049_10478754	3300010149	Marine	MKDIDEMLEKWIINTVIREQLRELIIKEINKNDKEKLSNRY*
Ga0098049_11226121	3300010149	Marine	MKEIDQMLDQWTFNTIIRKKLRDLIIKEINKYKIN
Ga0098049_11657193	3300010149	Marine	MKEIDNMLETWIYNSIIREELRKLIIKEIKDGKESL*
Ga0098061_11745562	3300010151	Marine	MKEIDEMLDQWIYNSIIRTKLRKLIVYKIIENEKV*
Ga0098061_13138283	3300010151	Marine	MVEIDEMLDRWVYNSIIREQLRELIIKEINKNEKV*
Ga0098061_13360571	3300010151	Marine	MVEIDEMLNRWVYNSIIREQLRELIIKEINKNEEI*
Ga0098059_10969443	3300010153	Marine	MEEIDEMLNRWIYNTIIRKELRDLIIKEINKNEK*
Ga0098059_13641143	3300010153	Marine	MKEIDEMLDQWIYNSIIRAKLRKLIVYKIIENEKV*
Ga0098059_13898522	3300010153	Marine	MKRIDEMLDRWIHNNIIRKQLRDLIIKAIRKENEKK*
Ga0098047_100609272	3300010155	Marine	MKEIDNMLNTWVYNTIIREQLRKLIIKEINKNEKV*
Ga0098047_101472362	3300010155	Marine	MKEIDEMLEKWIINTVIREQLRELIIKEINKNDKEKLSNRY*
Ga0098047_103206212	3300010155	Marine	MKEIDIYLNQWIRNSIIREQLRELIIKEINKNEKV*
Ga0133547_107782803	3300010883	Marine	MKRIDEMLKTWIINSVIREELRKLIIKEITKNEKL*
Ga0133547_117219122	3300010883	Marine	MKEIDEMLEQWIYNSIIREKLRELIIKAIKNETL*
Ga0134293_10383532	3300014973	Marine	MKEIDEMLNRWITNSLIREQLRKLIIKEINRNETL*
Ga0181370_10177422	3300017715	Marine	MKDIDEMLEKWIINTVIREQLRELIIKEINKNDKEKLSNRY
Ga0181375_10589113	3300017718	Marine	MVEIDEVLNRWIYNSIIREELRELIIKEINKNEKV
Ga0181408_10495673	3300017760	Seawater	MKEIDNMLNTWIYNSIIREELRKLIIKEIKNGKENL
Ga0181385_11229232	3300017764	Seawater	MKDIDDMLNTWIYNSIIREELRKLIIKEIKNGKENL
Ga0181385_11464201	3300017764	Seawater	VNEIDEMLNTWVYNSIIRKKLRELIIKEINKNEKV
Ga0187217_10539166	3300017770	Seawater	MKEIDQMLDQWIHSSIIRAKLRELIINRINDKQIE
Ga0181386_10560332	3300017773	Seawater	MKDIEKIDDMLNTWICNSIIRERLRKLIYKMIYNNERK
Ga0181386_11394111	3300017773	Seawater	MKDIDDMLNTWIYNSIIREELRKLIIKEIKDGKEN
Ga0181432_12983582	3300017775	Seawater	MNQIDEMLNRWIHNDIVRKQLRELIIKAIKYNEKI
Ga0181395_11467381	3300017779	Seawater	MKEIDNMLNTWIYNSIIREELRKLIIKEIKMEKKIYE
Ga0181379_13164592	3300017783	Seawater	MKEIDNMLNKWIYNCIIREELRELIIKEINKNEKV
Ga0206678_105776432	3300021084	Seawater	MKEIDEMLEQWIHNSIIRAKLRRLIIKEIMRYEKL
Ga0222716_106503382	3300021959	Estuarine Water	MKEIDEMLDQWIYNSIIRAKLRKLIVYKIIENEKV
Ga0208012_10020632	3300025066	Marine	MKDIDEMLEKWIINTIIREQLRELIIKEINKHEKI
Ga0208012_10133121	3300025066	Marine	MKDIDEMLEKWIINTIIREQLRELIIKEINKNDKEKLSNRY
Ga0208157_10033863	3300025086	Marine	MEEIDDMLNTWIYNNIIREKLRELIIKETNKHKQNTNTKG
Ga0208157_10455571	3300025086	Marine	LWHNARIMKEIDQMLNQWIRNSIIRAKLRELITKEINK
Ga0208157_11399943	3300025086	Marine	MVEIDEMLNRWIYNCIIREELRELIIKEINKNEKI
Ga0208011_10034163	3300025096	Marine	MKEIDEMLEQWIHNSIIRAKLRKLIIKEIMRYEKL
Ga0208011_11277561	3300025096	Marine	MKEIDQMLNRWIYNTIIRAQLRKLIIKEIDKERLKIKNK
Ga0208669_10979022	3300025099	Marine	MKEINNMLETWIYNSIIREELRKLIIKEIKDGKESL
Ga0208666_10021774	3300025102	Marine	MEEIDDMLNTWIYNNIIREKLRELIIKEINKHKQNTNTKG
Ga0208790_10580453	3300025118	Marine	EMLEKWIINTIIREQLRELIIKEINKNDKEKLSNRY
Ga0208919_10252723	3300025128	Marine	MKEIDIYLNQWIRNSIIREQLRNLIIKEINKNEKV
Ga0208919_11307232	3300025128	Marine	MKEINVMLEKWIRNSIIREELRNLIIKEINKNEKV
Ga0208919_12314682	3300025128	Marine	MKDIDEMLEKWIINTIIREQLRELIIKEINKNDKEKLSNRYXWNYLX
Ga0208919_12370262	3300025128	Marine	MKEIDNMLNTWIYNSIIREELRKLIIKEIKDGKENL
Ga0209232_11176232	3300025132	Marine	MKEINEMLDIWVYNSIIRKQLRDLIIKEINKNEKV
Ga0208299_11144652	3300025133	Marine	MKEIDEMLEQWIHNSIIRIKLRKLIIKEINKHEKL
Ga0209645_11254824	3300025151	Marine	MKEIDQMLNTWIRNSIIRNKLRELIVNEIKKYKNE
Ga0209337_10937604	3300025168	Marine	KEIDSMLKQWVYNSIIREQLRKLIIKEINKNEQKKSN
Ga0209337_11628272	3300025168	Marine	MKEIDEMLDRWITNTIIKKQLRKLIIKEINKNEKL
Ga0209337_12307202	3300025168	Marine	MKDIDEMLDRWIHNSIIRAKLRELIIKAINKDEKL
Ga0209757_100219494	3300025873	Marine	MQEIDQMLDRWIYNTIIRDQLRKLIIKEIDKERLKKKNT
Ga0208879_10266204	3300026253	Marine	MEEIDEMLNKWIHNSIIREQLRKLIINKTNKNEKL
Ga0209815_10962002	3300027714	Marine	MKEIDEMLDRWITNTIIKKQLRKLIIKEINNNEKL
Ga0209089_105459661	3300027838	Marine	MKEIDEMLDRWITNTIIKEQLRKLIIKEINNNEKL
Ga0308012_103671711	3300031647	Marine	KRLVDMQEIDRMLEQWIYNSIIREQLRKLIIKYANNK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101876

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences