Scaffold Ga0208298_1012875

Overview

Basic Information

• Taxon OID: 3300025084
• Scaffold ID: Ga0208298_1012875
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2002
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007139	Metagenome / Metatranscriptome	357	Y
F021865	Metagenome / Metatranscriptome	217	Y
F037681	Metagenome / Metatranscriptome	167	N
F099122	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208298_10128752	F037681	AGGAGG	MTQEELTVKREDLYKSWGYDIEKLPFGAHMWLAPEKETRQNPYSGVKVLLNPVELAIYDHTMQSYHDHIELGTMGDLVEARKLYKDFNKGKNWFIENNVRAYMDLID
Ga0208298_10128755	F099122	AGGAG	MHKKPLMSRLAQAYEDSKLLYFVTDGEGNCMLDRVTQVDAQIYAMKNGWSIGRHDDVSPVTNSDGIEINYANKDILNEEDLQ
Ga0208298_10128756	F021865	AGGAGG	MKCKCCDVLLSEWESKAKDPADRTQYLDLCSTCRYHSNPYSFSDDDWEIKKEDINIDIG
Ga0208298_10128757	F007139	GAGG	MITKGIAKYVYLDSTEKFNGEDTGKYTLTVAVDDKEAKALESAGVKVRTIQTEDGGSYKARKFSTKYPLSFDMVKMAEDGESIGHDFGAESEVQVLWKAGNEHPQHGVATYLTAVKVLKRTEGYKSQDAETSEFFA