Scaffold Ga0208791_1001725

Overview

Basic Information

• Taxon OID: 3300025083
• Scaffold ID: Ga0208791_1001725
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7868
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052604	Metagenome / Metatranscriptome	142	Y
F074740	Metagenome	119	Y
F079332	Metagenome	116	Y
F084724	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208791_10017251	F084724	AGTAG	MKLSNYEQNVILVALDHMEEHLEAIELDGCITEDTYKLRMEAVNTARTKIKNN
Ga0208791_10017252	F074740	N/A	MKNNKVTKVEHIWCEKNDRWIYLEYNEDYKILGMSFMQGDEYDVFKHNYADNDPGLMEFYETMLYTFPIEQKSVDRVSFINKVMWAYCSADQIRAKY
Ga0208791_10017253	F052604	N/A	MITTKNQAIQFLTTMQHLYPFVHPEDDLTQIDPPFTPEQVKYLSDCFDQCYHQLTDPCGVILDEIRPKMQFFNPKTSIKL
Ga0208791_10017256	F079332	N/A	MTTTNEQLSNNAGILAQQIAEVTIDYMVYTISHQLEYAGIDLDGDDYYDMLELITNTTIKNIINTLNK