Scaffold Ga0207890_1008090

Overview

Basic Information

• Taxon OID: 3300025079
• Scaffold ID: Ga0207890_1008090
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-48 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2292
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0005
  • Long. (^o): -144.9964

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F021188	Metagenome	220	N
F046006	Metagenome	152	N
F090883	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207890_10080902	F021188	N/A	MKTTEEIEIIWIPEEETKHSLTVENAQGVSELVDLPASTVDRICKKKYGHTNWARMGAIFPEELGRNPHEIDYLEGIVYFKNSRMV
Ga0207890_10080903	F000720	GAGG	MILNKENKIVRAAIPDRMMSTTFTLPIDDRKVVGIVNYTADVNGVTPLAFWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKDLADTLSQDNIIGQMVNYFTKNVEDIIMGLPIDKKQRMLSTDPYASQMKE
Ga0207890_10080904	F046006	GGAGG	VKEYLGPLAKYINLILILIILHFCITVMVVNFRYIDRLNNTIDTMWHEIEQVKETNISLYQFIEEHGNDFK
Ga0207890_10080905	F090883	GGAGG	MVTIALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKNYWEEQGERILRAAGKIH