Scaffold Ga0208920_1005633

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1005633
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2926
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → unclassified Chromatiaceae → Chromatiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007828	Metagenome	344	Y
F094399	Metagenome	106	N
F098066	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_10056333	F098066	GGAGG	LVDFNYDPFDDLVKSEVDKALQYLLDHEMISMEWDPDLEEMVFYMTDKQRAMPKPDDWESAP
Ga0208920_10056336	F007828	AGG	MLNSLTTIVRSNQNATMIRVGTGSSAVYTIFDLKTQSNTYTGTLNATKKAWNKYYRNSRQFVTKSGANHRYLGA
Ga0208920_10056337	F094399	N/A	MSKRQQRTPQEIIAETEARLERLRLREAKASAKSDPTLAPLLAHVDDLNKDIREAKKLLGDGPQSGVARIAKHQAWIEKIELEMEAAGDALHFAEQNKAHTQAQVAEAMKAYIETSKENSAEG
Ga0208920_10056338	F098066	N/A	LTWRNTPLVDFNYDPLNDLVKSEVDKALQYLLDHEMVSMEWDPDLEEMVFYMTEAQRAMPKPDDWESAP