Scaffold Ga0208920_1004917

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1004917
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3146
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013896	Metagenome / Metatranscriptome	267	Y
F045144	Metagenome / Metatranscriptome	153	Y
F080498	Metagenome	115	Y
F090868	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_100491710	F090868	N/A	MSLEETKKLYHKLVKKGVINKDIQMKEVKKMFHGVSKYNAKGDIKKIYEKIK
Ga0208920_10049176	F013896	N/A	MICDKCNGNGFTLVKGETIQCKKCLSSGEIKETLTPPKYSDDDLTNIYQTLYEESLKLSESNDPGMVAASLMAIGSRIYKTILEPEDYDNMMKKIVETDVQPYKKETLQ
Ga0208920_10049177	F080498	AGGA	MIKKIIINHLLLFFIVALFSCAPRTHVAPKPIEKDNQFMTQLLRNIITQGLDF
Ga0208920_10049178	F045144	AGGA	LTWHKGLYYHLYRTGKTIRKYPDGKDPEKQKLFGKTRVCSKCGKRKSTFQFHWKTDYRTKHRIVKRLQRQCGPCRVKKDNDKYSATADTYIRRRIQILQQESHKYRGRKKVQLSYDKIFTIWKKQFNKTGLTCPLSGETMTHKLGRGEILTNISVDRINSDKDYIRGNIQFVCVMANLMKNKYNNKTLLGWSKKIVDNLGRK