Scaffold Ga0208920

Basic Information
Taxon OID	3300025072 Open in IMG/M
Scaffold ID	Ga0208920_1004810 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025072 Open in IMG/M

Scaffold ID

Ga0208920_1004810 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3185
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3185

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-16.21	Long. (^o)	-76.61	Alt. (m)	Depth (m)	105
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-16.21

Long. (^o)

-76.61

Alt. (m)

Depth (m)

105

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019821	Metagenome	227	N
F021526	Metagenome	218	Y
F026851	Metagenome	196	Y
F081221	Metagenome	114	N
F087026	Metagenome	110	Y
F105104	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_10048102	F019821	GGAG	MTISNQTTLQELIDLGLFSAADVEKFNNKLARGADRAARKALVEGTMSAIKALIVSEAHDGNRYWSVKPAAHSLGFMSYIETDRGTILKALTKLTEEGYLTKVGLKKVDGKLTELDRTQVNAFQLRYIVTPVEEADAAVDEEAK
Ga0208920_10048103	F021526	GGAG	MRYFSIDYRSPPSGMGQIIDTEKPEKVGDQYNFILIDYGSNPHEDISYVMTKYFYSEQSAQEGWAGPVMPDIFQFLRDQKVTHVCDLELAYEYEGDRPVLDYRGLFTLDKWIEIISSYL
Ga0208920_10048104	F026851	AGGA	MTQQQIRQLLKDPTNMTPLEQAEVGRIKQAYFSAVAQETEAFISAKEAYEDAREIMDVIDRGEREVLMQLLKNMRDCERNMTIIATELETHFDISA
Ga0208920_10048105	F105104	AGGAG	MLHRIYYTNPAGADNYMIVPFDEIKGTVAFLESLDYEVVAYWPIEAEA
Ga0208920_10048106	F081221	AGGAGG	MDEVLHALYNILILLTGFSAIICASLAAVAITNITASSMISYRDDKLLLAWALPSGLFFSGLLMVLMGWT
Ga0208920_10048108	F087026	GGAG	MKFKPGDLVEVESTQTTGWGDEHHKHLVLVLKTYKSNRPPREQHYPLSAYLDETSGKAEELYEVLRDDGKYLKLGLKDYAWPGSRRTSRLVQETKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208920_1004810

Overview

Ecosystem & Geography

Associated Families

Sequences