Scaffold Ga0208920_1000059

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1000059
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42028
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (87.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015150	Metagenome / Metatranscriptome	257	Y
F020920	Metagenome / Metatranscriptome	221	Y
F026850	Metagenome	196	Y
F050672	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_100005941	F050672	GAGG	MPNDPIIIGIAVIAIAVLGYTAINGMLSNSKSSKDKTNKGA
Ga0208920_100005942	F015150	GGA	MHPLSWMFKYFIGSIVGAATVVQAVRIAKFELGNTVEGFIFRLGIHPDKYKRDDE
Ga0208920_100005944	F020920	GGA	MAGIIHGRVTASSKGREPIQFVTVPTPIKYLLLEVPSENKGDVYIGGSTVANNNAPVLAKGTPREFTFRHDVKEAPGDLADFYVHFGHNGDVVNYLAITI
Ga0208920_100005947	F026850	AGGA	MTTENNITITMQDVDVVMATNPQFKQLLLIAAESRRRAELTQNIEKEATKAKGK