Scaffold Ga0207896_1007388

Overview

Basic Information

• Taxon OID: 3300025071
• Scaffold ID: Ga0207896_1007388
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1987
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007826	Metagenome	344	Y
F012166	Metagenome	283	Y
F030601	Metagenome	185	Y
F057760	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_10073881	F057760	N/A	STITKLQTKIAPDVKLSRSQVVKTLVNEKARKLNGKLSK
Ga0207896_10073882	F012166	N/A	MANLVNNGVFLERILTPEEKLWKAVLSQGVYEACSKKYNALPLTYGEMRSALEWISLSNKDFCVVCQFAGYDPTYILRKAKNKVNKWLPNGA
Ga0207896_10073886	F007826	GGA	VIKKETGFTFKLLNLIKKCKEKGKFQLASKLIDKYKIDREKLAEDYYD
Ga0207896_10073887	F030601	GAG	MPGIKDGATEKKELDTNVIELIKRILRLKTIHRDRGTYSATGDSLDLSDDGQPSDDSRRPKGENTVRGGVSQDDKPKQPIFVNEDPEYCKHLAKFFKGEK