NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207896_1007388

Scaffold Ga0207896_1007388


Overview

Basic Information
Taxon OID3300025071 Open in IMG/M
Scaffold IDGa0207896_1007388 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-36 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1987
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007826Metagenome344Y
F012166Metagenome283Y
F030601Metagenome185Y
F057760Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0207896_10073881F057760N/ASTITKLQTKIAPDVKLSRSQVVKTLVNEKARKLNGKLSK
Ga0207896_10073882F012166N/AMANLVNNGVFLERILTPEEKLWKAVLSQGVYEACSKKYNALPLTYGEMRSALEWISLSNKDFCVVCQFAGYDPTYILRKAKNKVNKWLPNGA
Ga0207896_10073886F007826GGAVIKKETGFTFKLLNLIKKCKEKGKFQLASKLIDKYKIDREKLAEDYYD
Ga0207896_10073887F030601GAGMPGIKDGATEKKELDTNVIELIKRILRLKTIHRDRGTYSATGDSLDLSDDGQPSDDSRRPKGENTVRGGVSQDDKPKQPIFVNEDPEYCKHLAKFFKGEK

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