Scaffold Ga0208667_1003063

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1003063
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5200
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006845	Metagenome / Metatranscriptome	363	Y
F007417	Metagenome	351	Y
F012117	Metagenome / Metatranscriptome	283	N
F067646	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100306310	F006845	AGG	MKSYKEQMDLNSYLLEQDFEDYCRFAYEKIQSACEFLGIINDEDYESFKERCYTQLEADYLNSIEKTIH
Ga0208667_100306311	F012117	AGGAG	MDILGGMSNPNNESQQVYLAFKTSHQQFFANGETPVDFQYMQLDPATFKSGWGRYTKVSGFEYVWDDKFTVISPQPADDYKRAFSAWVFPQGAQHAYLWQRFSWAESTAFNNILNGFWNQMDANSDSLPVVKFEGSKPIQVGAGNSSDIQFSFAKFAPRSDGFVIPQWYLDQEAPVEDTFKSPNDGLSDKVAEMVSQNELTDDDIPF
Ga0208667_10030632	F007417	GAG	MTRYTLQVQLPSLGWVVAIKTSDLFYMAKKRARLIAQGHKVKLTKEKK
Ga0208667_10030638	F067646	AGGA	MLEWILYFIAGIFGLVFIGIILSVLAFIYIIRELD