Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1002745 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1002745 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5557
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (10.53%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

5557

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (10.53%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (11.11%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004523	Metagenome	434	Y
F005491	Metagenome / Metatranscriptome	399	Y
F009491	Metagenome / Metatranscriptome	317	Y
F011658	Metagenome / Metatranscriptome	288	Y
F021776	Metagenome / Metatranscriptome	217	Y
F022645	Metagenome	213	Y
F058131	Metagenome	135	N
F072842	Metagenome	121	Y
F099111	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_10027451	F011658	N/A	MKTLWQQLKPEIKESLNDQEEKYPSMVKAIKIALKDNYIWSHLSIGEVRDIVYFTDYTYASLSSYDWSY
Ga0208667_100274510	F058131	AGAAG	MTITFNNIGKTYKVSGDSTVKVTHHHDAIVSVCGEYFKNKYTGEWLSELEVQDYYDAQKLEEEYENKYY
Ga0208667_100274513	F072842	N/A	MSRIHRELLKQQLMNYDYSKTPVNKMILVELDCSSMTVQSEGPQGFTHYKTSGGSLGNLIDLMNRRVKQNPDYDLIIVDRSDKVW
Ga0208667_100274515	F099111	N/A	MTQETVERIIDETVDTIIDSIDESTVDYMFEYGDYEETDNQFLEDLKVFKTEVVKELYNRINNNK
Ga0208667_100274516	F009491	N/A	MSNTIKSNQIKILKINNKTYLPYQLHQLPKYFDKYTTDFFNLKGYCYISLDDVLDNNPYFNLKNFKDRLTFNKDIHYTQKR
Ga0208667_10027452	F021776	N/A	MTKEELEVKISTLQTLVIQKNEELSEYAAQIERLNDELKDLNKPKLTPMQLDELYQAIEQGIESFDFDDQDNYETDFHIDYDNRIAIESMSFHNADELLRVVYNEARELFAEAKLPEDEISTQEHLNQH
Ga0208667_10027454	F005491	N/A	MSAFYKDTRFNGKLIRLEDVIDEVYNRALKTIDDGLYELLNDKDEDEFYMDYKEAFGHIIEELQKFHNVEE
Ga0208667_10027455	F004523	N/A	MNYLSTEIKSAREAMTIFKILGIKDVTTDRQRKNGTTVYELPIQQVWQTLQPRPIRFATYTTGYVRNISESNSSCYQINKTKQVTYESGMTGKERIMIPHWEDRLIYLAKFIIKNYYQKPTYVMSDYVMDCLREAYKRDYNNQPSNRLPFGDEVQVIVNGHRYNLS
Ga0208667_10027456	F022645	N/A	MKDTNEIEKQLQHKADKYIEQKAKEMFEIHREIAMYLGGKLPNYIDYITDFNDYSKDLVANRYMYFTSNSPSAIQNKLEHELRKNYKDKLVAKYTRELISKLEIFD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1002745

Overview

Ecosystem & Geography

Associated Families

Sequences