NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F099111

Metagenome Family F099111

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099111
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 63 residues
Representative Sequence MTQETVERIIDETVDTIIDSIDEKTVDYMFEYGNYQETDDQFVEDLQVFKKQVITELYNRINK
Number of Associated Samples 80
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 34.95 %
% of genes from short scaffolds (< 2000 bps) 78.64 %
Associated GOLD sequencing projects 75
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (76.699 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Strait → Unclassified → Seawater
(41.748 % of family members)
Environment Ontology (ENVO) Unclassified
(85.437 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(92.233 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 57.14%    β-sheet: 0.00%    Coil/Unstructured: 42.86%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.42
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF00118Cpn60_TCP1 3.88
PF01068DNA_ligase_A_M 0.97
PF04545Sigma70_r4 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG0459Chaperonin GroEL (HSP60 family)Posttranslational modification, protein turnover, chaperones [O] 3.88
COG1423ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) familyReplication, recombination and repair [L] 0.97
COG1793ATP-dependent DNA ligaseReplication, recombination and repair [L] 0.97


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A76.70 %
All OrganismsrootAll Organisms23.30 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10253871Not Available551Open in IMG/M
3300000115|DelMOSum2011_c10018602Not Available3361Open in IMG/M
3300000115|DelMOSum2011_c10030153All Organisms → Viruses → Predicted Viral2413Open in IMG/M
3300000116|DelMOSpr2010_c10016195All Organisms → Viruses → Predicted Viral3723Open in IMG/M
3300000116|DelMOSpr2010_c10138745Not Available849Open in IMG/M
3300000117|DelMOWin2010_c10164291Not Available718Open in IMG/M
3300002488|JGI25128J35275_1014095All Organisms → Viruses → Predicted Viral2040Open in IMG/M
3300005747|Ga0076924_1164440Not Available754Open in IMG/M
3300006752|Ga0098048_1006570All Organisms → Viruses → Predicted Viral4360Open in IMG/M
3300006752|Ga0098048_1038131All Organisms → Viruses → Predicted Viral1542Open in IMG/M
3300006752|Ga0098048_1078584All Organisms → Viruses → Predicted Viral1010Open in IMG/M
3300006789|Ga0098054_1244076Not Available649Open in IMG/M
3300006793|Ga0098055_1271738Not Available635Open in IMG/M
3300006810|Ga0070754_10196631Not Available942Open in IMG/M
3300006810|Ga0070754_10384054Not Available617Open in IMG/M
3300006916|Ga0070750_10382523Not Available590Open in IMG/M
3300006922|Ga0098045_1123539Not Available603Open in IMG/M
3300007692|Ga0102823_1206614Not Available525Open in IMG/M
3300009024|Ga0102811_1179193Not Available792Open in IMG/M
3300009027|Ga0102957_1155766Not Available811Open in IMG/M
3300009050|Ga0102909_1166160Not Available529Open in IMG/M
3300009079|Ga0102814_10278369Not Available911Open in IMG/M
3300009086|Ga0102812_10201739Not Available1084Open in IMG/M
3300009433|Ga0115545_1271258Not Available567Open in IMG/M
3300009435|Ga0115546_1216661Not Available660Open in IMG/M
3300009437|Ga0115556_1223506Not Available674Open in IMG/M
3300010149|Ga0098049_1161102Not Available692Open in IMG/M
3300010151|Ga0098061_1330733All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon521Open in IMG/M
3300012920|Ga0160423_10268805Not Available1177Open in IMG/M
3300017706|Ga0181377_1019126Not Available1515Open in IMG/M
3300017706|Ga0181377_1047815Not Available828Open in IMG/M
3300017709|Ga0181387_1010148Not Available1823Open in IMG/M
3300017709|Ga0181387_1082612Not Available651Open in IMG/M
3300017713|Ga0181391_1002013Not Available5815Open in IMG/M
3300017713|Ga0181391_1040162Not Available1122Open in IMG/M
3300017713|Ga0181391_1052021Not Available964Open in IMG/M
3300017714|Ga0181412_1017659Not Available2035Open in IMG/M
3300017714|Ga0181412_1061858Not Available928Open in IMG/M
3300017719|Ga0181390_1014293Not Available2715Open in IMG/M
3300017719|Ga0181390_1153869Not Available577Open in IMG/M
3300017725|Ga0181398_1050230Not Available1010Open in IMG/M
3300017728|Ga0181419_1078713Not Available826Open in IMG/M
3300017730|Ga0181417_1068975Not Available859Open in IMG/M
3300017731|Ga0181416_1185980Not Available503Open in IMG/M
3300017735|Ga0181431_1004929Not Available3374Open in IMG/M
3300017735|Ga0181431_1108060Not Available622Open in IMG/M
3300017740|Ga0181418_1053145All Organisms → Viruses → Predicted Viral1006Open in IMG/M
3300017740|Ga0181418_1153701Not Available552Open in IMG/M
3300017746|Ga0181389_1086987Not Available872Open in IMG/M
3300017749|Ga0181392_1032339All Organisms → Viruses → Predicted Viral1642Open in IMG/M
3300017750|Ga0181405_1122850Not Available648Open in IMG/M
3300017755|Ga0181411_1043386All Organisms → Viruses → Predicted Viral1399Open in IMG/M
3300017759|Ga0181414_1087744Not Available821Open in IMG/M
3300017760|Ga0181408_1014522All Organisms → Viruses → Predicted Viral2204Open in IMG/M
3300017762|Ga0181422_1057576All Organisms → Viruses → Predicted Viral1241Open in IMG/M
3300017762|Ga0181422_1068868All Organisms → Viruses → Predicted Viral1122Open in IMG/M
3300017762|Ga0181422_1111797Not Available849Open in IMG/M
3300017762|Ga0181422_1170542Not Available663Open in IMG/M
3300017763|Ga0181410_1065743Not Available1089Open in IMG/M
3300017767|Ga0181406_1011510Not Available2861Open in IMG/M
3300017770|Ga0187217_1098945Not Available993Open in IMG/M
3300017771|Ga0181425_1214265Not Available602Open in IMG/M
3300017772|Ga0181430_1065437All Organisms → Viruses → Predicted Viral1111Open in IMG/M
3300017773|Ga0181386_1062889All Organisms → Viruses → Predicted Viral1182Open in IMG/M
3300017773|Ga0181386_1199980Not Available600Open in IMG/M
3300017776|Ga0181394_1058543Not Available1282Open in IMG/M
3300017779|Ga0181395_1009407Not Available3484Open in IMG/M
3300017779|Ga0181395_1047136Not Available1427Open in IMG/M
3300017781|Ga0181423_1035083All Organisms → Viruses → Predicted Viral2030Open in IMG/M
3300017783|Ga0181379_1219967Not Available662Open in IMG/M
3300017783|Ga0181379_1300452Not Available546Open in IMG/M
3300017786|Ga0181424_10037445All Organisms → Viruses → Predicted Viral2102Open in IMG/M
3300018416|Ga0181553_10633048Not Available563Open in IMG/M
3300018420|Ga0181563_10766652Not Available530Open in IMG/M
3300018428|Ga0181568_10619145Not Available852Open in IMG/M
3300019751|Ga0194029_1024549Not Available932Open in IMG/M
3300019765|Ga0194024_1142365Not Available561Open in IMG/M
3300020438|Ga0211576_10107992All Organisms → Viruses → Predicted Viral1533Open in IMG/M
3300021185|Ga0206682_10043539All Organisms → Viruses → Predicted Viral2516Open in IMG/M
3300021373|Ga0213865_10174412All Organisms → Viruses → Predicted Viral1083Open in IMG/M
3300021958|Ga0222718_10475895Not Available609Open in IMG/M
3300022061|Ga0212023_1023887Not Available836Open in IMG/M
3300022072|Ga0196889_1000788Not Available8891Open in IMG/M
3300022164|Ga0212022_1070690Not Available536Open in IMG/M
(restricted) 3300023109|Ga0233432_10000862All Organisms → Viruses29154Open in IMG/M
(restricted) 3300023109|Ga0233432_10328923Not Available694Open in IMG/M
3300024346|Ga0244775_10395912All Organisms → Viruses → Predicted Viral1136Open in IMG/M
(restricted) 3300024529|Ga0255044_10444164Not Available545Open in IMG/M
3300025070|Ga0208667_1001658Not Available7870Open in IMG/M
3300025070|Ga0208667_1002745Not Available5557Open in IMG/M
3300025084|Ga0208298_1025486All Organisms → Viruses → Predicted Viral1272Open in IMG/M
3300025098|Ga0208434_1089162Not Available618Open in IMG/M
3300025132|Ga0209232_1029480All Organisms → Viruses → Predicted Viral2107Open in IMG/M
3300025132|Ga0209232_1249255Not Available513Open in IMG/M
3300025671|Ga0208898_1095873Not Available914Open in IMG/M
3300025695|Ga0209653_1129328Not Available771Open in IMG/M
3300025769|Ga0208767_1025130Not Available3194Open in IMG/M
3300025879|Ga0209555_10030426Not Available2543Open in IMG/M
3300025879|Ga0209555_10054164Not Available1800Open in IMG/M
3300027753|Ga0208305_10218980Not Available681Open in IMG/M
(restricted) 3300027837|Ga0255041_10342864Not Available545Open in IMG/M
(restricted) 3300027861|Ga0233415_10332730Not Available720Open in IMG/M
3300029309|Ga0183683_1044890Not Available663Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater41.75%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine16.50%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous7.77%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine5.83%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine5.83%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.91%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine2.91%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh2.91%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine2.91%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater1.94%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.94%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater0.97%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.97%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.97%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.97%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine0.97%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.97%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.97%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300002488Marine viral communities from the Pacific Ocean - ETNP_2_60EnvironmentalOpen in IMG/M
3300005747Seawater microbial communities from Vineyard Sound, MA, USA - control T14EnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006922Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaGEnvironmentalOpen in IMG/M
3300007692Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743EnvironmentalOpen in IMG/M
3300009024Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705EnvironmentalOpen in IMG/M
3300009027Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MGEnvironmentalOpen in IMG/M
3300009050Estuarine microbial communities from the Columbia River estuary - metaG 1557A-02EnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009435Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413EnvironmentalOpen in IMG/M
3300009437Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414EnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300010151Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaGEnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300017706Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaGEnvironmentalOpen in IMG/M
3300017709Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27EnvironmentalOpen in IMG/M
3300017713Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11EnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017725Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29EnvironmentalOpen in IMG/M
3300017728Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24EnvironmentalOpen in IMG/M
3300017730Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13EnvironmentalOpen in IMG/M
3300017731Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16EnvironmentalOpen in IMG/M
3300017735Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21EnvironmentalOpen in IMG/M
3300017740Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13EnvironmentalOpen in IMG/M
3300017746Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017750Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29EnvironmentalOpen in IMG/M
3300017755Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09EnvironmentalOpen in IMG/M
3300017759Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28EnvironmentalOpen in IMG/M
3300017760Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16EnvironmentalOpen in IMG/M
3300017762Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18EnvironmentalOpen in IMG/M
3300017763Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20EnvironmentalOpen in IMG/M
3300017767Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20EnvironmentalOpen in IMG/M
3300017770Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)EnvironmentalOpen in IMG/M
3300017771Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300017773Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300017781Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14EnvironmentalOpen in IMG/M
3300017783Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10EnvironmentalOpen in IMG/M
3300017786Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18EnvironmentalOpen in IMG/M
3300018416Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018428Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019751Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MGEnvironmentalOpen in IMG/M
3300019765Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MGEnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300021185Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015EnvironmentalOpen in IMG/M
3300021373Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300022061Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022164Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)EnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300024529 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_21EnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025098Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025132Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)EnvironmentalOpen in IMG/M
3300025671Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)EnvironmentalOpen in IMG/M
3300025695Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025879Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_85LU_5_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027753Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes)EnvironmentalOpen in IMG/M
3300027837 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_3EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300029309Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1025387113300000101MarineMNQETVERIIDETVDTIIDSIDESTVDYMFEYGDYEETDNQFLEDLKVFKKEIITE
DelMOSum2011_1001860223300000115MarineMNQETVERIIDETVDTIIDSIDESTVDYMFEYGDYEETDNQFLEDLKVFKKEIITELYNRINNNK*
DelMOSum2011_1003015373300000115MarineMTQEVVERIVDETIDTLVDNLDEITVDYMFEYGDYKETDEQFTQDLPVFKRAVIIELYNRLTK*
DelMOSpr2010_1001619533300000116MarineMTQEIVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDNQFVEDLIVFKQQVITELFNRINNK*
DelMOSpr2010_1013874513300000116MarineMNQETVERIIDETVDTIIDSIDESTVDYMFEYGDYEETDNQFLEDLKVFKKEIITELYNRIN
DelMOWin2010_1016429123300000117MarineMTQEIVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDNQFVEDLVVFKQQVITELFNRINNK*
JGI25128J35275_101409513300002488MarineINKNNMTQETVERIIDETVDTMIDYIDEKTVDYMLELGDYEETNDQFVEDLIVFKKQIVEELNNRINNNK*
Ga0076924_116444033300005747MarineNMNQETVERIIDETVDTIIDNIDEKTVDYMFEYGDYEETDNQFLEDLKIFKKEIITELYNRINNK*
Ga0098048_1006570103300006752MarineMTQETVERIIDETVDTIIDSIDESTVDYMFEYGDYEETDNQFLEDLKVFKTEVVKELYNRINNNK*
Ga0098048_103813143300006752MarineMTQETVERIIDETVDTIIDSIDESTVDYMFEIGDYKETDDQFLEDLIVFKKQVVEELYNRINNNKK*
Ga0098048_107858423300006752MarineMNQETVERIIDETVDTIIDSIDETTVDYMFEYGKYKETDNQFLEDLKVFKKEIITELYNRINNK*
Ga0098054_124407613300006789MarineMTQETVERIIDETVDTIIDSIDESTVDYMFEIGDYKETDDQFLEDLQVFKKQVVEELYSRINNNKK*
Ga0098055_127173813300006793MarineMTQEIVQRIIDETVDTMIDSIDESTVDYMFEIGDYKETDDQFLEDLIVFKKQVVEELYNRINNNKK*
Ga0070754_1019663123300006810AqueousMTQEIVERIIDETVDTIIDSIDETTVDYMFEYGNYEETDNQFLEDLQVFKKEIITELYNRINKK*
Ga0070754_1038405413300006810AqueousTVDTIIDSIDEKTVDYMFEYGNYEETDNQFVEDLVVFKQQVITELFNRINNK*
Ga0070750_1038252313300006916AqueousMNQETVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDNQFLEDLKIFKTEVVKELYNRINNK*
Ga0098045_112353913300006922MarineMNQETVERIIDETVDTIIDSIDETTVDYMFEYGDYEETDNQFLEDLKVFKKEIITELYNRINNK*
Ga0102823_120661413300007692EstuarineMTQEIVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDNQFLEDLQVFKKEIITELYSRINKK*
Ga0102811_117919313300009024EstuarineMTQEIVERIIDETVDTLIDSIDETTVDYMFEYGNYQETDDQFVEDLQVFKRQVITELYNRINKK*
Ga0102957_115576623300009027Pond WaterMTQETVERIIDETVDTIIDSIDETTVDYMFEYGDYEETDNQFLEDLKIFKKEI
Ga0102909_116616013300009050EstuarineMTQETVERIIDETVDTLIDSIDEKTVDYMFEYGDYEETDNQFLEELKIFKKEIITELYNRINNK*
Ga0102814_1027836923300009079EstuarineMTQEIVERIIDETVDTMIDSIDETTVDYMFEYGNYQETDDQFVEDLQVFKKQVITELYNRINKK*
Ga0102812_1020173933300009086EstuarineMTQETVERIIDETVDTMIDSIDETTVDYMFEYGNYQETDDQFVEDLQVFKKQIITELYNRINK*
Ga0115545_127125823300009433Pelagic MarineMNQETVERIIDETVDTLIDSIDESTVDYMFEYGDYEETDSQFLEDLKVFKKEIITELYNRINNK*
Ga0115546_121666113300009435Pelagic MarineNNMNQETVERIIDETVDTLIDSIDESTVDYMFEYGDYEETDNQFLEDLKVFKKEIITELYNRINNK*
Ga0115556_122350623300009437Pelagic MarineMNLINNKNNMNQETVERIIDETVDTLIDSIDESTVDYMFEYGDYEETDSQFLEDLKVFKKEIITELYNRINNK*
Ga0098049_116110223300010149MarineMNQETVERIIDETVDTIIDSIDESTVDYMFEYGDYEETDNQFLEDLKVFKKEIITELYNRINNK*
Ga0098061_133073323300010151MarineMIEKIIDETIDTIIDSIDESTVDYMFEYGDYEETDNQFLEDLKVFKTEVVKELYNRINNN
Ga0160423_1026880523300012920Surface SeawaterMSKKIINKVVDETVDTIIDSIDEKTVDYMFEYGNYEETDNQFVEDLIVFKQQVITELFNRINNK*
Ga0181377_101912613300017706MarineMTQETVERIIDETVDTIIDSIDESTVDYMFEYGDYKETDNQFLEDLKVFKKEIITELYN
Ga0181377_104781513300017706MarineMTQEVVERIIDETVDTIIDSIDEKTVDYMFEYGDYKETNNQFVEDLQVFKKQVVEELYNRINK
Ga0181387_101014823300017709SeawaterMTQETSIIVDETVDTIIDNIEDKLVDYMFELGNYEETDDQFIKDLQVFKKQVITELYNRINK
Ga0181387_108261213300017709SeawaterMTQETVERIIDETVDTMIDYIDEKTVDYMLELGDYEETNDQFVEDLIVFKKQIVEELNNRINNNK
Ga0181391_100201323300017713SeawaterMTQEIVERIIDETVDTIIDSIDETTVDYMFEYGNYQETDDQFVEDLQVFKKQVITELYNRINK
Ga0181391_104016233300017713SeawaterMTQETVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDDQFVEDLIVFKQQVIEELYNRIKK
Ga0181391_105202113300017713SeawaterKNNMTQETVERIIDETVDTIIDSIDEKTIDYMFEYGNYEETDDKFVEDLIVFKQQVIEELYNRIKK
Ga0181412_101765923300017714SeawaterMTQETVEKIIEETVETIIDSIDEKTIDYMFVYGNYEETHDQFVEDLQVFKRQVITELYNRINK
Ga0181412_106185823300017714SeawaterMTQEIVERIIDETVDTIIDSIDEKTVDYMFEYGNYQETDDQFVEDLQVFKKQVITELYNRIKK
Ga0181390_101429373300017719SeawaterMTQETVERIIDETVDTIIDSIDETTVDYMFEYGNYQETDDQFVEDLQVFKKQVITELYNRINK
Ga0181390_115386923300017719SeawaterMNQETVERIIDETVDTLIDSIDETTVDYMFEYGKYEETDNQFLEDLTVFKKQVITELYNRINNK
Ga0181398_105023013300017725SeawaterMTQETVERIIDETVDTMIDYIDEKTIDYMLEMGGYEETDDQFVEDLQAFKKQVITELYNRINK
Ga0181419_107871323300017728SeawaterMTQEVVERIIDETVDTIIDSIDETTVDYMFDYGDYKETNDQFIEDLQVFKKQVITELYNRINK
Ga0181417_106897513300017730SeawaterTQETVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDDKFVEDLIVFKQQVIEELYNRIKK
Ga0181416_118598023300017731SeawaterMNLININNMTQETVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDDQFVEDLIVFKQQVIEELYNRM
Ga0181431_100492993300017735SeawaterMTQEIVERIIDETVDTMIDSIDETTVDYMFEYGNYQETDDQFVEDLQVFKKQVITELYNRINK
Ga0181431_110806013300017735SeawaterTVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETNDQFVEDLIVFKQQVIEELYNRIKK
Ga0181418_105314543300017740SeawaterINNMTQETVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDDKFVEDLIVFKQQVIEELYNRIKK
Ga0181418_115370113300017740SeawaterTVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDDQFVEDLIVFKQQVIEELYNRMKK
Ga0181389_108698713300017746SeawaterNMTQETSIIVDETVDTIIDNIEDKLVDYMFELGNYEETDDQFIKDLQVFKKQVITELYNRINK
Ga0181392_103233973300017749SeawaterMNQETVERIIDETVDTIIDSIDEKTVDYMFEHGDYEETDNQFLEDLKIFKKEIITELYNRINNK
Ga0181405_112285023300017750SeawaterMTQETVERIIDETVDTMIDYIDEKTIDYMLEMGGYEETDDQFVEDLQAFKKQVITELYNRIKK
Ga0181411_104338633300017755SeawaterMTQETVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETNDQFVEDLIVFKQQVIEELYNRMKK
Ga0181414_108774433300017759SeawaterMTQETVERIIDETVDTIIDSIDEKTVDYMFEYGNYQETDDQFVEDLQVFKKQVITELYNRINK
Ga0181408_101452243300017760SeawaterMTQETVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDDQFVEDLIVFKQQVIEELYNRMKNNTM
Ga0181422_105757613300017762SeawaterIIDETVDTIIDSIDEKTVDYMFEYGNYEETDDKFVEDLIVFKQQVIEELYNRIKK
Ga0181422_106886813300017762SeawaterETVDTIIDSIDEKTVDYMFEYGNYEETDDQFVEDLIVFKQQVIEELYNRMKK
Ga0181422_111179723300017762SeawaterVERIIDETVDTIIDSIDETTVDYMFDYGDYKETNDQFIEDLQVFKKQVITELYNRINK
Ga0181422_117054213300017762SeawaterETVERIIDETVDTIIDSIDETTVDYMFEYGDYEETDNQFLEDLKIFKKEIITELYNRINN
Ga0181410_106574333300017763SeawaterMTQEIVERIIDETVDTIIDSIDEKTIDYMFVYGNYEETHDQFVEDRQVFKRQVITELYNRINK
Ga0181406_101151043300017767SeawaterMTQETLIIVDETVDTIIDNIEDKLVDYMFELGNYEETDDQFIKDLQVFKKQVITELYNRINK
Ga0187217_109894533300017770SeawaterMNLININNMTQETVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDDQFVEDLIVFKQQVIEELYNRIKK
Ga0181425_121426513300017771SeawaterNNMTQEIVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDDQFVEDLIVFKQQVIEELYNRMKK
Ga0181430_106543713300017772SeawaterININNMTQETVERIIDETVDTTIDSIDEKTVDYMFEYGNYEETDDQFVEDLIVFKQQVIEELYNRMKK
Ga0181386_106288913300017773SeawaterMTQEVVERIIDETVDTIIDSIDEKTVDYMFEYGDYKETDDQFVEDLQVFKKQVITELYNRLIK
Ga0181386_119998013300017773SeawaterNMTQETVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDDQFVEDLIVFKQQVIEELYNRIKK
Ga0181394_105854323300017776SeawaterMTQETVERIIDETVDTIIDSIDETTVDYMFEYGNYQETDDQFVEDLQVFKKQVITELYNRIKK
Ga0181395_100940743300017779SeawaterMTQETVERIIDETVDTIIDSIDETTVDYMFEYGKYEETDNQFLEDLKVFKKEIITELYNRINNK
Ga0181395_104713643300017779SeawaterLTDNITELKLNNMTQETSIIVDETVDTIIDNIEDKLVDYMFELGNYEETDDQFIKDLQVFKKQVITELHNRINK
Ga0181423_103508333300017781SeawaterMTQEIVERIIDETVDTIIDSIDETTVDYMFDYGDYKETNDQFIEDLQVFKKQVITELYNRINK
Ga0181379_121996713300017783SeawaterNNMTQETVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDDQFVEDLIVFKQQVIEELYNRMKK
Ga0181379_130045213300017783SeawaterNNMTQETVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDDKFVEDLIVFKQQVIEELYNRIKK
Ga0181424_1003744573300017786SeawaterETVDTIIDSIDEKTVDYMFEYGNYEETDDKFVEDLIVFKQQVIEELYNRIKK
Ga0181553_1063304823300018416Salt MarshMTQEIVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDNQFVEDLVVFKQQVITELFNRINNK
Ga0181563_1076665223300018420Salt MarshMDNINEYKLNKLNNMTQEIVEKIIDETVDTIIDSIDEKTVDYMFEYGNYEETDNQFVEDLIVFKQQVITELFNRINNK
Ga0181568_1061914523300018428Salt MarshMTQEIVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDNQFIEDLKIFKTEVVKELYNRINNK
Ga0194029_102454933300019751FreshwaterMTQEIVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDNQFVEDLVVFKQQVITE
Ga0194024_114236513300019765FreshwaterIIDETVDTIIDSIDEKTVDYMFEYGNYEETDNQFVEDLVVFKQQVITELFNRINNK
Ga0211576_1010799233300020438MarineMTQEVVERIIDETVDTIIDSIDEKTVDYMFEYGNYQETDDQFVEDLQVFKKQVITELYNRINK
Ga0206682_1004353973300021185SeawaterMTQETVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDDQFVEDLIVFKQQVIEELYNRMKK
Ga0213865_1017441213300021373SeawaterMNQETVERIIDETVDTIIDNIDEKTVDYMFEYGNYEETDNQFLEDLVVFKQQVITE
Ga0222718_1047589523300021958Estuarine WaterMTQEIVERIIDETVDTLIDSIDETTVDYMFEYGNYEETDNQFLEDLKVFKKEIITELYNRINNK
Ga0212023_102388713300022061AqueousMNQETVERIIDETVDTIIDSIDESTVDYMFEYGDYEETDNQFLEDLKVFKKEIITEL
Ga0196889_100078823300022072AqueousMNQETVERIIDETVDTIIDSIDESTVDYMFEYGDYEETDNQFLEDLKVFKKEIIIELNNRINNNK
Ga0212022_107069013300022164AqueousMNQETVERIIDETVDTIIDSIDESTVDYMFEYGDYEETDNQFLEDLKVFKKEIITELYNRINNNK
(restricted) Ga0233432_10000862273300023109SeawaterMTQEIVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDNQFLEDLQVFKKEIITELYNRINKE
(restricted) Ga0233432_1032892333300023109SeawaterMNQETVERIIDETVDTIIDSIDEKTVDYMFEYGDYEETDNQFLEDLKIFKKEIITELYNRINNK
Ga0244775_1039591213300024346EstuarineMTQETVERIIDETVDTLIDSIDETTVDYMFEYGNYQETDDQFVEDLQVFKKQVITELYNRINKK
(restricted) Ga0255044_1044416413300024529SeawaterMTQEIVERIIDETVDTIIDSIDETTVDYMFEYGNYQETDDQFVEDLQVFKKEIITELYNRINKK
Ga0208667_1001658233300025070MarineMTQETVERIIDETVDTIIDSIDESTVDYMFEIGDYKETDDQFLEDLIVFKKQVVEELYNRINNNKK
Ga0208667_1002745153300025070MarineMTQETVERIIDETVDTIIDSIDESTVDYMFEYGDYEETDNQFLEDLKVFKTEVVKELYNRINNNK
Ga0208298_102548633300025084MarineMNQETVERIIDETVDTIIDSIDETTVDYMFEYGKYKETDNQFLEDLKVFKKEIITELYNRINNK
Ga0208434_108916233300025098MarineIDETVDTIIDSIDESTVDYMFEYGDYEETDNQFLEDLKVFKKEIITELYNRINNK
Ga0209232_102948043300025132MarineMTQETVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDDKFVEDLIVFKQQVIEELYNRIKK
Ga0209232_124925523300025132MarineMDNIYERQLINKNNMTQETVERIIDETVDTMIDYIDEKTVDYMLELGDYEETNDQFVEDLIVFKKQIVEELNNRINNNK
Ga0208898_109587323300025671AqueousMTQEIVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDNQFVEDLIVFKQQVITELFNRINNK
Ga0209653_112932823300025695MarineMTQEIVERIIDETVDTIIDSIDETTVDYMFEYGNYEETDNQFLEDLKIFKKEIITELYNRINNK
Ga0208767_1025130103300025769AqueousMNQETVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDNQFLEDLKIFKTEVVKELYNRINNK
Ga0209555_1003042643300025879MarineMTQETVERIIDETVDTIIDSIDETTVDYMFEYGNYEETDNQFLEDLKVFKKEIITELYNRINNK
Ga0209555_1005416423300025879MarineMTQEIVERIIDETVDTIIDSIDETTVDYMFEYGNYEETDNQFLEDLQVFKKEIITELYNRINKK
Ga0208305_1021898013300027753EstuarineNNNNMTQEIVERIIDETVDTMIDSIDETTVDYMFEYGNYQETDDQFVEDLQVFKKQVITELYNRINKK
(restricted) Ga0255041_1034286413300027837SeawaterMTQEIVERIIDETVDTIIDSIDEKTVDYMFEYGDYEETDEQFLEDLKIFKKEIITELYNRINNK
(restricted) Ga0233415_1033273013300027861SeawaterMTQEIVERIIDETVDTIIDSIDETTVDYMFEYGNYEETDNQFLEDLKVFKKEIIT
Ga0183683_104489033300029309MarineMTQETVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETNDQFMEDLKIFKSEVVKELFSRFNR


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