Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1001658 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1001658 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7870
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (16.67%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

7870

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (16.67%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005491	Metagenome / Metatranscriptome	399	Y
F007611	Metagenome / Metatranscriptome	348	Y
F008022	Metagenome	340	Y
F011658	Metagenome / Metatranscriptome	288	Y
F014834	Metagenome / Metatranscriptome	259	Y
F030052	Metagenome	186	Y
F058131	Metagenome	135	N
F082545	Metagenome	113	N
F099111	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100165810	F011658	N/A	MKTLYQQLKPEIKQALNEQEEKYPSLVKGVKIALKENYLWSHLSIGQARDLIYFTDHAYASLCSYDWSYGEKFLICED
Ga0208667_100165811	F008022	N/A	MTTTELQAKIEALQAALETKTQEQNAYRGQIDTLKKQLADLNKPKLTPLQFDELHTAIEEAVGSFDFDDCDNYETDFHINYDNRIAIESMSFHNSDELVREVFNQISELFAEIPEDDNQLNQD
Ga0208667_100165812	F005491	N/A	MSAFYKDTRFNGKLVRLEDVIEEIYDRALETIDDSLYELLDNKDDDEFYEDYKEAFPLIVEKLQKFHDNEE
Ga0208667_100165814	F014834	N/A	MKDTNEIEKQLKRKADKYIEQKAEEMFEIHREIALYLGTSLPSFIDYITHWNSYDSAAPENKSNHTAYCDVHQTTKKYRLELESNYKERLVAKYTRELIMKLDIFE
Ga0208667_100165815	F082545	N/A	MDFTYITVLDFNSGKVYQYNLADVGDNYLFEDKDEPQAEEVEELLIDQGHNLFDTQWMIHADPTINQIKL
Ga0208667_100165817	F007611	N/A	MKRKTITVLDYTTSRVYQYRVKINIHSEKFITFKGHSLSNVEWMEHQISNVITN
Ga0208667_100165819	F058131	N/A	MTITFNNIGKTYEVSGDNTVKVTHHHDAIVSVCGEYFKNKYTNEWLSELEVQDYYDSCKLEEENDNKYY
Ga0208667_100165821	F030052	N/A	MDNITDMNNKLQQLEDLLQVHDWYYAMSDDNYYYKLGRKQYEQIWKLMDELKEGGYFTESENLYDKYSK
Ga0208667_100165823	F099111	N/A	MTQETVERIIDETVDTIIDSIDESTVDYMFEIGDYKETDDQFLEDLIVFKKQVVEELYNRINNNKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1001658

Overview

Ecosystem & Geography

Associated Families

Sequences