Scaffold Ga0208667_1000461

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1000461
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17342
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010848	Metagenome / Metatranscriptome	298	Y
F023113	Metagenome / Metatranscriptome	211	Y
F029484	Metagenome / Metatranscriptome	188	Y
F045112	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100046117	F029484	AGGAG	MAQANPNAAVRAANGLVGTTHIMAVTDVSVKSVADVTAEAQAEGFTVVAIEDDVASDGCHIALQGAGATPSLTGATLVCVFS
Ga0208667_100046118	F010848	AGGAG	MAQADRRAAAAGEFIGKDVFLKSFTQQSGNISATQLTALVSSVQNLNLSVLKVGAVSGAAVKMILEGGDNLANGDLAGHVIADVSF
Ga0208667_100046120	F023113	GAG	MPKKNEPEIMPKPYVESGNIEAHIIADMLRIESITAELKEFKEVTKDRLNKLESWIIAIVGLTFTTLMTTVVGLLMKIL
Ga0208667_10004619	F045112	AGG	MREKLDHWKNVCKLHWKEIVTLSIALHWAVDLLILGPLFIALGWFLGVNFGHGH