Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1000139 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1000139 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33432
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (84.91%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

33432

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (84.91%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021211	Metagenome / Metatranscriptome	220	Y
F040673	Metagenome / Metatranscriptome	161	Y
F051160	Metagenome / Metatranscriptome	144	Y
F051183	Metagenome / Metatranscriptome	144	N
F077329	Metagenome / Metatranscriptome	117	Y
F097161	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100013912	F021211	AGGAG	MAKEKKVDLRQEAQTKMESMVEQHNTLVQELQSANERLAEIKQMIIEHQGYMKGLEACEKDCEVK
Ga0208667_10001392	F051160	AGGAG	MGKVISAVDAAVESVESPKMVSIKHTRVMKDASGKDVTVLDYEETKDVDNAIADAEAQKARLEADLVDVEAELVDYKAIKDAE
Ga0208667_100013931	F051183	AGGAG	MAITGTKVKTNTSNKNWFINHCRIVEAEQIDSQYNDCSIRMKYEDVDSGYNYTAFINQNFEKDNNGIVTGLKYPDDVNTLYLAAKADLNVSDVGQVNVEKLIGKEVAVLNYKSTGKYKNATWGVVSSLDNTDELGKRFMDQVAKGYPKNYMKPTPEVLEAKSGDTLDNGMKVDDLPF
Ga0208667_100013936	F097161	AGCAGG	VNNKIENGFKIDASISIDVYYSFDEEGGYYIDTDSMREEFEKALDEIEGDISNLNHERQEHLRTKHMEG
Ga0208667_100013937	F040673	AGGA	METNKKDMDDMWVCDYCGSEEVEEQVWVYMNTRQIVETTGNDNFWCSNCEDEVTPLRYFEWTEKIAEECGGNKDKYDEITAGSRM
Ga0208667_100013941	F077329	GGAG	MIDRTMWFLYNKLGDNDRRAPSIDSISGMFFNYWKLMNVMDVNTQTLSAIDIYNGLNNCYDKTAKETAKNLYEYGEVAANADYSVSYYEQEHEIHDVYANCVNLNEVLIEGGEPEFDDTEPFTEALNEVVYEDIEYEVASESFNIYEDGIEWYKTCHPGDDKLMTYMYDTGKNLDWDAIDDFLGDKLSLVEAQNADMHRTQVRKFMLDRLAKQNIDIISSLEQTENGMKEVDPNTGELQD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1000139

Overview

Ecosystem & Geography

Associated Families

Sequences