Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1000113 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1000113 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36067
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (80.36%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

36067

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (80.36%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F018089	Metagenome	237	Y
F030892	Metagenome	184	N
F031659	Metagenome	182	Y
F034356	Metagenome / Metatranscriptome	175	Y
F042853	Metagenome / Metatranscriptome	157	N
F045156	Metagenome / Metatranscriptome	153	Y
F087019	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100011323	F087019	AGGAGG	MIGELIGLAFVIGFMLVSLTAVGFIIADRNYDNKRKND
Ga0208667_100011325	F003051	N/A	MKTKILKSKVTIEMNNEEYDTMFKYIDKLRSMLNTLHETNDLWLSDVQNLHSLKWELVEMLDAEWNPNTYKYIKRGTK
Ga0208667_100011333	F042853	AGGAG	MSQEGTYIIEVERHYVATIEVDADRKAEAIRYAHAEENQHIANHNEDYFRNFQEFEHEAKVVGFKSYEEQYPEED
Ga0208667_100011334	F034356	N/A	MMLNEGKAFNFNLKEINMTHNDIKKGMRVQLTPIPMISHEPRTAKVMDNMKGITRMVHIEEKNGYFADMGSVYVDEIEYVLYDNDMPEPIELSEAHQKKLQLTKLF
Ga0208667_100011336	F031659	GGAG	MKKKCENPNGLQNMATIVDSKTRKAVKFNSLDKAKEHLKSKGYRFRQAFNFKEDRSMIYQGRFGWVKLSASKDYLNKTSMEQGTVWNIVKI
Ga0208667_100011338	F030892	AGGA	MENLMEICSETRMERLLNPQMSDHYYTHFHGKYGYRPYEIKVGRKWVFMKNPTHKVRMPLAKFKVHAFLQWRRDAMTDASCKQYNITGKYSRPRAWWKDYGFTSNPKHFDYEPSRLAW
Ga0208667_100011339	F018089	AGGA	MTNTTQQTTFEVKTPEAKASYGMVRKIAQQFSKATNCPKDIKWGTIHGHFVSRLNDKAKPLTQGQVAKILSMKALPSADLKAMRSYKKLVSIA
Ga0208667_100011343	F045156	N/A	MPHLGGIKFKALHKQHGRLSMRRNQGKPGNITRDEFSENWDKIFGKKKENKNAKKKDND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1000113

Overview

Ecosystem & Geography

Associated Families

Sequences