Scaffold Ga0208667_1000049

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1000049
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50938
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (75.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020253	Metagenome / Metatranscriptome	225	Y
F025151	Metagenome / Metatranscriptome	203	Y
F056058	Metagenome / Metatranscriptome	138	N
F105908	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100004931	F056058	N/A	MESFKYYLIATLITLVIIFSFIKSVEAESIHDTTPVDEIVLANELLDKEMAILVLGGIDYFVQECTPLTERGEKYRDKIIKHHEISEGLLGVNPTYIKGAIAVSGYDCYEMYELITQIEDSNLVEEPEQPVDKKESISEK
Ga0208667_100004939	F105908	N/A	MIFSESDRGHRIVIDSYKKADEAYQWCSDNIPLTEWTVVQDENAESFYFERDEYAQQFLLVFGGRYYKHGN
Ga0208667_100004945	F025151	GGAG	VGELIRRNPKRTQERLLKLRKIVGPEKNPKRRFVAEFENEEYLKWTCVSCKGVDYGETHLIKGAGRLGELVDWCDDNCNKLYVLGMNDIIFFEDENDAAMFTLVWK
Ga0208667_100004955	F020253	N/A	MGKRSVPHVKTPKRGQKASKKNMSHSTFVVKRHPNSKRVTSGAIT