NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105908

Metagenome / Metatranscriptome Family F105908

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105908
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 68 residues
Representative Sequence MIFSESDRGHRIVIDSYKKADEAYIWCSDNIPLSEWTVVQDENAESFYFERDEYAQNFLLVFGGRYYKHG
Number of Associated Samples 72
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 50.00 %
% of genes near scaffold ends (potentially truncated) 29.00 %
% of genes from short scaffolds (< 2000 bps) 81.00 %
Associated GOLD sequencing projects 63
AlphaFold2 3D model prediction Yes
3D model pTM-score0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (72.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(31.000 % of family members)
Environment Ontology (ENVO) Unclassified
(93.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(81.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 28.57%    β-sheet: 21.43%    Coil/Unstructured: 50.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.73
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
d.58.5.1: Prokaryotic signal transducing proteind2cz4a12cz40.72785
d.58.29.0: automated matchesd4p2fa_4p2f0.72582
d.58.29.0: automated matchesd2wz1a_2wz10.71548
d.58.29.1: Adenylyl and guanylyl cyclase catalytic domaind1fx2a_1fx20.71252
d.58.32.2: D-lactate dehydrogenased1f0xa11f0x0.71053


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00271Helicase_C 7.00
PF13649Methyltransf_25 7.00
PF04851ResIII 5.00
PF13847Methyltransf_31 5.00
PF00156Pribosyltran 3.00
PF08275Toprim_N 2.00
PF03796DnaB_C 1.00
PF00004AAA 1.00
PF12627PolyA_pol_RNAbd 1.00
PF00574CLP_protease 1.00
PF13328HD_4 1.00
PF12171zf-C2H2_jaz 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0358DNA primase (bacterial type)Replication, recombination and repair [L] 2.00
COG0616Periplasmic serine protease, ClpP classPosttranslational modification, protein turnover, chaperones [O] 2.00
COG0740ATP-dependent protease ClpP, protease subunitPosttranslational modification, protein turnover, chaperones [O] 2.00
COG0305Replicative DNA helicaseReplication, recombination and repair [L] 1.00
COG1030Membrane-bound serine protease NfeD, ClpP classPosttranslational modification, protein turnover, chaperones [O] 1.00
COG1066DNA repair protein RadA/Sms, contains AAA+ ATPase domainReplication, recombination and repair [L] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A72.00 %
All OrganismsrootAll Organisms28.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000141|LPjun08P41300mDRAFT_c1003872Not Available3034Open in IMG/M
3300000262|LP_A_09_P04_1300DRAFT_1008785Not Available2311Open in IMG/M
3300000930|BpDRAFT_10050480All Organisms → Viruses → Predicted Viral3338Open in IMG/M
3300002913|JGI26060J43896_10149886Not Available588Open in IMG/M
3300005398|Ga0066858_10166882Not Available636Open in IMG/M
3300005399|Ga0066860_10000372Not Available19371Open in IMG/M
3300005408|Ga0066848_10000968Not Available10375Open in IMG/M
3300005427|Ga0066851_10010509All Organisms → Viruses → Predicted Viral3689Open in IMG/M
3300005951|Ga0066379_10181006Not Available677Open in IMG/M
3300006091|Ga0082018_1010093Not Available1668Open in IMG/M
3300006164|Ga0075441_10112957Not Available1037Open in IMG/M
3300006164|Ga0075441_10270640Not Available623Open in IMG/M
3300006191|Ga0075447_10062928All Organisms → Viruses → Predicted Viral1341Open in IMG/M
3300006191|Ga0075447_10246345Not Available579Open in IMG/M
3300006191|Ga0075447_10304627Not Available512Open in IMG/M
3300006193|Ga0075445_10037592All Organisms → Viruses → Predicted Viral1978Open in IMG/M
3300006193|Ga0075445_10121979Not Available955Open in IMG/M
3300006193|Ga0075445_10258126Not Available595Open in IMG/M
3300006752|Ga0098048_1001215Not Available11457Open in IMG/M
3300006789|Ga0098054_1010823All Organisms → Viruses → Predicted Viral3762Open in IMG/M
3300006789|Ga0098054_1012606All Organisms → Viruses → Predicted Viral3461Open in IMG/M
3300006789|Ga0098054_1085485Not Available1187Open in IMG/M
3300006793|Ga0098055_1063807All Organisms → Viruses → Predicted Viral1466Open in IMG/M
3300006793|Ga0098055_1085860All Organisms → Viruses → Predicted Viral1235Open in IMG/M
3300006902|Ga0066372_10945627Not Available525Open in IMG/M
3300006924|Ga0098051_1055932Not Available1085Open in IMG/M
3300006947|Ga0075444_10205187Not Available795Open in IMG/M
3300006947|Ga0075444_10331629Not Available582Open in IMG/M
3300006947|Ga0075444_10397592Not Available518Open in IMG/M
3300007963|Ga0110931_1191983Not Available611Open in IMG/M
3300008253|Ga0105349_10005782Not Available5254Open in IMG/M
3300009420|Ga0114994_10771749Not Available625Open in IMG/M
3300009425|Ga0114997_10159395Not Available1327Open in IMG/M
3300010150|Ga0098056_1158922Not Available762Open in IMG/M
3300012413|Ga0138258_1598757Not Available771Open in IMG/M
3300017703|Ga0181367_1086538Not Available539Open in IMG/M
3300020298|Ga0211657_1026718All Organisms → Viruses → Predicted Viral1283Open in IMG/M
3300020335|Ga0211690_1049491Not Available964Open in IMG/M
3300020335|Ga0211690_1109497Not Available590Open in IMG/M
3300020358|Ga0211689_1212463Not Available523Open in IMG/M
3300020383|Ga0211646_10038507All Organisms → Viruses → Predicted Viral1853Open in IMG/M
3300020389|Ga0211680_10292947Not Available604Open in IMG/M
3300020389|Ga0211680_10302826Not Available592Open in IMG/M
3300020389|Ga0211680_10329756Not Available561Open in IMG/M
3300020407|Ga0211575_10306912Not Available657Open in IMG/M
3300020407|Ga0211575_10481707Not Available512Open in IMG/M
3300020412|Ga0211552_10354327Not Available540Open in IMG/M
3300020438|Ga0211576_10188523All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1102Open in IMG/M
3300021065|Ga0206686_1041245Not Available1379Open in IMG/M
3300021087|Ga0206683_10225419Not Available976Open in IMG/M
3300021089|Ga0206679_10287953Not Available895Open in IMG/M
3300021352|Ga0206680_10149619Not Available905Open in IMG/M
3300021442|Ga0206685_10034753All Organisms → Viruses → Predicted Viral1623Open in IMG/M
3300021442|Ga0206685_10230315Not Available625Open in IMG/M
3300024231|Ga0233399_1103096Not Available654Open in IMG/M
(restricted) 3300024264|Ga0233444_10420474Not Available548Open in IMG/M
3300025070|Ga0208667_1000049Not Available50938Open in IMG/M
3300025085|Ga0208792_1032739All Organisms → Viruses → Predicted Viral1025Open in IMG/M
3300025103|Ga0208013_1029175All Organisms → Viruses → Predicted Viral1585Open in IMG/M
3300025103|Ga0208013_1053153Not Available1095Open in IMG/M
3300025108|Ga0208793_1086793Not Available894Open in IMG/M
3300025265|Ga0208467_1001428Not Available6165Open in IMG/M
3300025276|Ga0208814_1034122All Organisms → Viruses → Predicted Viral1589Open in IMG/M
3300025673|Ga0209494_1075372All Organisms → Viruses → Predicted Viral1066Open in IMG/M
3300026205|Ga0208406_1026960All Organisms → Viruses → Predicted Viral1493Open in IMG/M
3300026213|Ga0208131_1126002Not Available613Open in IMG/M
3300026264|Ga0207991_1021346All Organisms → Viruses → Predicted Viral2213Open in IMG/M
3300026505|Ga0228647_1107464Not Available661Open in IMG/M
3300027668|Ga0209482_1053812All Organisms → Viruses → Predicted Viral1456Open in IMG/M
3300027668|Ga0209482_1100566Not Available927Open in IMG/M
3300027668|Ga0209482_1199668Not Available554Open in IMG/M
3300027668|Ga0209482_1224434Not Available508Open in IMG/M
3300027672|Ga0209383_1018800All Organisms → Viruses → Predicted Viral3018Open in IMG/M
3300027672|Ga0209383_1108156Not Available919Open in IMG/M
3300027685|Ga0209554_1201910Not Available579Open in IMG/M
3300027714|Ga0209815_1251743Not Available533Open in IMG/M
3300027801|Ga0209091_10007704Not Available7896Open in IMG/M
3300027827|Ga0209035_10076764All Organisms → Viruses → Predicted Viral1638Open in IMG/M
3300028192|Ga0257107_1008676Not Available3364Open in IMG/M
3300028192|Ga0257107_1071171All Organisms → Viruses → Predicted Viral1057Open in IMG/M
3300028192|Ga0257107_1103774Not Available848Open in IMG/M
3300028391|Ga0233394_1122113Not Available520Open in IMG/M
3300031141|Ga0308021_10048069All Organisms → Viruses → Predicted Viral1781Open in IMG/M
3300031141|Ga0308021_10253831Not Available665Open in IMG/M
3300031599|Ga0308007_10000790Not Available14070Open in IMG/M
3300031599|Ga0308007_10023735All Organisms → Viruses → Predicted Viral2391Open in IMG/M
3300031599|Ga0308007_10163608Not Available789Open in IMG/M
3300031602|Ga0307993_1028249All Organisms → Viruses → Predicted Viral1406Open in IMG/M
3300031602|Ga0307993_1149430Not Available586Open in IMG/M
3300031656|Ga0308005_10086163Not Available819Open in IMG/M
3300031658|Ga0307984_1075831Not Available1007Open in IMG/M
3300031658|Ga0307984_1084554All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae939Open in IMG/M
3300031660|Ga0307994_1182110Not Available678Open in IMG/M
3300031660|Ga0307994_1249426Not Available541Open in IMG/M
3300031757|Ga0315328_10021845All Organisms → Viruses → Predicted Viral3408Open in IMG/M
3300031775|Ga0315326_10662078Not Available660Open in IMG/M
3300031886|Ga0315318_10078657Not Available1803Open in IMG/M
3300032019|Ga0315324_10123333Not Available974Open in IMG/M
3300032032|Ga0315327_10627160Not Available662Open in IMG/M
3300034695|Ga0372840_038818All Organisms → Viruses → Predicted Viral1386Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine31.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine30.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine12.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater11.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine3.00%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater3.00%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean2.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine2.00%
Methane Seep MesocosmEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm2.00%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater1.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.00%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine1.00%
Polar MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000141Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P4 1300mEnvironmentalOpen in IMG/M
3300000262Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_1300EnvironmentalOpen in IMG/M
3300000930Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16mEnvironmentalOpen in IMG/M
3300002913Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LVEnvironmentalOpen in IMG/M
3300005398Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201EnvironmentalOpen in IMG/M
3300005399Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F14-07SV275EnvironmentalOpen in IMG/M
3300005408Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV72EnvironmentalOpen in IMG/M
3300005427Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65EnvironmentalOpen in IMG/M
3300005951Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_250_ad_251m_LV_AEnvironmentalOpen in IMG/M
3300006091Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP125EnvironmentalOpen in IMG/M
3300006164Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNAEnvironmentalOpen in IMG/M
3300006191Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNAEnvironmentalOpen in IMG/M
3300006193Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNAEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006902Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_AEnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300006947Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNAEnvironmentalOpen in IMG/M
3300007963Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)EnvironmentalOpen in IMG/M
3300008253Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson CanyonEnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009425Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136EnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300012413Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Arthur Harbor ice station, Antarctica - RNA6.ICE_1m.20151110 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017703Marine viral communities from the Subarctic Pacific Ocean - ?Lowphox_02 viral metaGEnvironmentalOpen in IMG/M
3300020298Marine microbial communities from Tara Oceans - TARA_B100000953 (ERX556051-ERR599128)EnvironmentalOpen in IMG/M
3300020335Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX556030-ERR599035)EnvironmentalOpen in IMG/M
3300020358Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX555925-ERR599009)EnvironmentalOpen in IMG/M
3300020383Marine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971)EnvironmentalOpen in IMG/M
3300020389Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)EnvironmentalOpen in IMG/M
3300020407Marine microbial communities from Tara Oceans - TARA_B100001105 (ERX556033-ERR599115)EnvironmentalOpen in IMG/M
3300020412Marine microbial communities from Tara Oceans - TARA_B100001167 (ERX556053-ERR599047)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300021065Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 500m 12015EnvironmentalOpen in IMG/M
3300021087Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015EnvironmentalOpen in IMG/M
3300021089Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 12015EnvironmentalOpen in IMG/M
3300021352Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 150m 12015EnvironmentalOpen in IMG/M
3300021442Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015EnvironmentalOpen in IMG/M
3300024231Seawater microbial communities from Monterey Bay, California, United States - 43DEnvironmentalOpen in IMG/M
3300024264 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MGEnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025085Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025103Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025265Marine microbial communities from the Deep Pacific Ocean - MP2098 (SPAdes)EnvironmentalOpen in IMG/M
3300025276Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)EnvironmentalOpen in IMG/M
3300025673Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson Canyon (SPAdes)EnvironmentalOpen in IMG/M
3300026205Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF89A (SPAdes)EnvironmentalOpen in IMG/M
3300026213Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73 (SPAdes)EnvironmentalOpen in IMG/M
3300026264Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F14-07SV275 (SPAdes)EnvironmentalOpen in IMG/M
3300026505Seawater microbial communities from Monterey Bay, California, United States - 59DEnvironmentalOpen in IMG/M
3300027668Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027672Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027685Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV (SPAdes)EnvironmentalOpen in IMG/M
3300027714Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027801Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)EnvironmentalOpen in IMG/M
3300027827Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV (SPAdes)EnvironmentalOpen in IMG/M
3300028192Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500mEnvironmentalOpen in IMG/M
3300028391Seawater microbial communities from Monterey Bay, California, United States - 24DEnvironmentalOpen in IMG/M
3300031141Marine microbial communities from water near the shore, Antarctic Ocean - #351EnvironmentalOpen in IMG/M
3300031599Marine microbial communities from water near the shore, Antarctic Ocean - #71EnvironmentalOpen in IMG/M
3300031602Marine microbial communities from Ellis Fjord, Antarctic Ocean - #260EnvironmentalOpen in IMG/M
3300031656Marine microbial communities from water near the shore, Antarctic Ocean - #67EnvironmentalOpen in IMG/M
3300031658Marine microbial communities from Ellis Fjord, Antarctic Ocean - #78EnvironmentalOpen in IMG/M
3300031660Marine microbial communities from Ellis Fjord, Antarctic Ocean - #261EnvironmentalOpen in IMG/M
3300031757Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315EnvironmentalOpen in IMG/M
3300031775Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315EnvironmentalOpen in IMG/M
3300031886Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416EnvironmentalOpen in IMG/M
3300032019Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 21515EnvironmentalOpen in IMG/M
3300032032Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 32315EnvironmentalOpen in IMG/M
3300034695Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2012_500mEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
LPjun08P41300mDRAFT_100387243300000141MarineMIFSDSNNGHRVVIDSYKKGDDAYQWCSDNLPLSEWTVVQDENAESFYFEEEQYAQNFLLVFGGRYYKHGG*
LP_A_09_P04_1300DRAFT_100878533300000262MarineMTFSKNHRIIIHAYKSGDIAYKWCADNVPLSEWTSVSDENGDSFYFEDEEYAQNFLLIHGGRYYKNG*
BpDRAFT_1005048043300000930Freshwater And MarineMIFSDNRSGHRVVIDSYKKGDDAYQWCSDNLPLSEWTVVQDENAESFYFEEEQYAQNFLLVFGGRYYKHGG*
JGI26060J43896_1014988623300002913MarineMIFSDSDSGHKIVIDSRKKGDEAYEWCSNNIPLSEWTVVQDENAETFYFEDEQYAQNFLLVHGGRYYKHGD
Ga0066858_1016688213300005398MarineMIFSDSKSGHRVVVHAYKKADEAYLWCSDNLPLSEWTVVQDENAESFYFENEQDAQNFLLLFGGRYYKHG
Ga0066860_10000372303300005399MarineMIFSDSNNGHRVVIDSYKKGDEAYQWCSDHLPLSEWTVVSDENGDSFYFEEEQYAQNFLLVHGGRYYKHGG*
Ga0066848_1000096823300005408MarineMIFSDSKSGHRVVVHAYKKADEAYLWCSDNLPLSEWTVVQDENAESFYFENEQDAQNFLLLFGGRYYKHGG*
Ga0066851_1001050923300005427MarineMIFSDSKSGHRVVIHAYKKADAAYLWCSDNLPLSEWTVVQDENAESFYFENEQDAQNFLLLFGGRYYKHGG*
Ga0066379_1018100623300005951MarineMIFSESNRGHRIVIDSYRKADEAYLWCADNIPLMEWTVVQDENGESFYFERDEYAQNFLLVFGGRYYKHGG*
Ga0082018_101009323300006091MarineMIFSDSENGHKIVIYGWKKGDEAYQWCSENLPLTEWTVVSDENGDAFYFEDEQYAQNFLLVFGGRYYKHGG*
Ga0075441_1011295723300006164MarineMTFSKNHRIIIDSYKSGDIAYKWCADNVPLAEWTAVPSANGDSFYFEDEKYAQNFLLIHGGRYYSNG*
Ga0075441_1027064023300006164MarineMTSSKHRVVIDAYKQGDIAFKWCADNIPLSEWSTLPSAVGEWFYFKDEKHVQNFLLVNGGRYYKNGK*
Ga0075447_1006292823300006191MarineMTFSKNHRIIIDAYKSGDIAYKWCADNVPLSEWTAVASANGDSFYFEDEKYAQNFLLIHGGRYYKNG*
Ga0075447_1024634523300006191MarineMIFSKKHRIVIDSYKSGDLAYKWCSDNVPLSEWTSVSDENSDSFYFEDEKYAQNFLLIHGGRYYKDGG*
Ga0075447_1030462713300006191MarineHRIIIDSYKSGDIAYKWCADNVPLAEWTAVPSANGDSFYFEDEKYAQNFLLIHGGRYYSNG*
Ga0075445_1003759243300006193MarineMIFSKKHRIVIDSYKSGDLAYKWCSDNVPLSEWTSVSDENSDSFYFEDEKYAQNFLLIHGGRYYKNG*
Ga0075445_1012197923300006193MarineMTFSKKHRIIIDSCKLGTAAYKWCADNVPTLEWTAVSDENCDSFYFDKEKHVQNFLLVHGGRYYKNG*
Ga0075445_1025812623300006193MarineMTFSKKHRIIIDSYKSGDIAYKWCSDNVPLSEWTSVSDENSDSFYFEDEKYAQNFLLIHGGRYYKDGG*
Ga0098048_100121563300006752MarineMIFSESDRGHRIVIDSYKKADEAYQWCSDNIPLTEWTVVQDENAESFYFERDEYAQQFLLVFGGRYYKHGN*
Ga0098054_101082323300006789MarineMIFSDSKSGHRVVVHAYKKADEAYLWCSDNLPLSEWTVVQDENAESFYFENEQDAQNFLLLFGGRYYKYGG*
Ga0098054_101260643300006789MarineMIFSESDRGHRIVIDSYKKADEAYQWCSDNIPLSEWTVVQDENAESFYFERDEYAQQFLLVFGGRYYKHGN*
Ga0098054_108548513300006789MarineDSYKKADEAYIWCSDNIPLSEWTVVQDENAESFYFERDEYAQNFLLVFGGRYYKHG*
Ga0098055_106380713300006793MarineVMIFSESDRGHRIVIDSYKKADEAYIWCSDNIPLSEWTVVQDENAESFYFERDEYAQNFLLVFGGRYYKHG*
Ga0098055_108586013300006793MarineMIFSESDRGHRIVIDSYKKADEAYQWCSDNIPLSEWTVVQDENAETFYFERDEYAQQFLLVFGGRYYKHGN*
Ga0066372_1094562713300006902MarineMIFSDSENGHKIVIHAYKKGDEAYQWCSENLPLTEWTVVSDENGDAFYFEDEQYAQNFLLLFGGRYYKHGG*
Ga0098051_105593213300006924MarineMIFSESDRGHRIVIDSYKKADEAYIWCSDNIPLSEWTVVQDENAESFYFERDEYAQNFLLVFGGRYYKHG*
Ga0075444_1020518723300006947MarineMIFSDSDSGHKIVIESYKKADEAYQWCSDNIPLLDWTVVQDENGEMFYFEKEKYAQNFLLVFGGRYYKHGG*
Ga0075444_1033162923300006947MarineMTFSKNHRIIIDAYKSGDIAYKWCADNVPLSEWTVVSDENCDSFYFEDEKYAQNFLLIHGGRYHKDGG*
Ga0075444_1039759213300006947MarineNHRIIIDSYKSGDIAYKWCADNVPLAEWTAVPSANGDSFYFEDEKYAQNFLLIHGGRYYSNG*
Ga0110931_119198323300007963MarineMIFSESDRGHRIVIDSYKKADEAYIWCSDNIPLSEWTVVQDENAESFYFERDEYAQQFLLVFGGRYYKHGN*
Ga0105349_1000578243300008253Methane Seep MesocosmMIFSESDRGHKIVIDSYTKADEAYRWCAENVPFLEWTVVQEENGEMFYFEKDGYAQNFLLMFGGRYYKHGG*
Ga0114994_1077174923300009420MarineMTFSKHRVVIDAYKEGDIAYKWCADNVPLSEWTAVPSANGDSFYFEDEKYAQNFLLI
Ga0114997_1015939523300009425MarineMTFSKHRVVIDAYKEGDIAYKWCADNVPLSEWTAVPSANGDSFYFEDEKYAQNFLLIHGGRYYKNG*
Ga0098056_115892213300010150MarineMIFSESDRGHRIVIDSYKKADEAYQWCSDNIPLTEWTVLQDENAESFYFERDEYAQRFLLVFGGRYYKHG*
Ga0138258_159875723300012413Polar MarineMTFSKKHRIIIDSYKSGDIAYKWCSDNVPLSEWTSVSDENSDSFYFEDEKYAQNFLLIHGKVL*
Ga0181367_108653813300017703MarineMIFSDSKSGHRVVVHAYKKADEAYLWCSDNLPLSEWTVVQDENAESFYFENEQDAQNF
Ga0211657_102671823300020298MarineMIFSDSENGHKIVIYGWKKGDEAYQWCSENLPLTEWTVVSDENGDAFYFEDEQYAQNFLLVFGGRYYKHGG
Ga0211690_104949113300020335MarineMIFSESDRGHKIVIESYKKADEAYRWCTNNIPLLEWTVVQDENGEMFYFEKEKYAQNFLLVFGGRYYKHGGYVTIK
Ga0211690_110949723300020335MarineEYQTKCQAMIFSESDRGHKIVIDSYTKADEAYRWCAENVPFLEWTVVQEENGEMFYFEKDGYAQNFLLMFGGRYYKHGG
Ga0211689_121246323300020358MarineSDRGHKIVIDSYTKADEAYRWCAENIPFLEWTVVQEENGEMFYFEKDGYAQNFLLIFGGRYYKHGG
Ga0211646_1003850753300020383MarineMIFSDSKSGHRVVVHAYKKADEAYLWCSDNLPLSEWTVVQDENAESFYFENEQDAQNFLLLFGGRYYKHGG
Ga0211680_1029294723300020389MarineMTFSKNHRIIIDAYKSGDIAYKWCADNVPLSEWTAVPSANGDSFYFEDEKYAQNFLLIHGGRYYKDGG
Ga0211680_1030282613300020389MarineMISSNHRIVIDSYKQGAVAYKWCADNIPLTEWKAVPSANGDSFYFEDEQYAQNFLLVHGGRYYKHGG
Ga0211680_1032975623300020389MarineMTFSKNHRIIIDSYKKGDDAYQWCSDNVSLSEWTSVSDENSDSFYFEDEQDAQNFLLIHGGRYYKNG
Ga0211575_1030691223300020407MarineMTFSKNHRIIIHAYKSGDIAYKWCADNVPLSEWTSVSDENGDSFYFEDEEYAQNFLLIHGGRYYKNG
Ga0211575_1048170723300020407MarineMIFSDSNNGHRVVIDSYKKGDDAYQWCSDNLPLSEWTVVQDENAESFYFEEEQYAQNFLLVFGGRYYKHGG
Ga0211552_1035432713300020412MarineMIFSESDRGHRIVIDSYKKADEAYIWCSDNIPLSEWTVVQDENAESFYFERDEYAQQFLLVFGGRYYKHGD
Ga0211576_1018852333300020438MarineMIFSESDRGHRIVIDSYKKADEAYIWCSDNIPLTEWTVLQDENAESFYFERDEYAQRFLLVFGGRYYKHGN
Ga0206686_104124533300021065SeawaterMIFSESNRGHRIVIDSYRKADEAYLWCADNIPLMEWTVVQDENGESFYFERDEYAQNFLLVFGGRYYKHGG
Ga0206683_1022541933300021087SeawaterMIFSDSKSGHRVVIHAYKKADEAYLWCSDNLPLSEWTVVQDENAESFYFENEQHAQNFLLLFGGRYYKHG
Ga0206679_1028795323300021089SeawaterMIFSDNRSGHRVVIDSYKKGDDAYQWCSDNLPLSEWTVVQDENAESFYFEEEQYAQNFLLVFGGRYYKHGG
Ga0206680_1014961913300021352SeawaterMIFSESNRGHRIVIDSYRKADEAYLWCADNIPLMEWTVVQDENGESFYFERDEYAQNFLLVFGGRYYK
Ga0206685_1003475323300021442SeawaterMIFSDSENGHKIVIHAYKKADEAYLWCSENIPLSEWTVIQDENAESFYFEDERHAQNFLLMFGGRYYKHGG
Ga0206685_1023031523300021442SeawaterMIFSESNRGHRIVIDSYRKADEAYLWCADNIPLMEWTVVQDENGESFYFERDEYAQQFLLVFGGRYYKHG
Ga0233399_110309623300024231SeawaterKIVIDSYTKADEAYRWCAENVPFLEWTVVQEENGEMFYFEKDGYAQNFLLMFGGRYYKHG
(restricted) Ga0233444_1042047423300024264SeawaterMIFSESDSGHRIAIDSYKKADEAYIWCSDNIPLTEWTVLQDENAESFYFERDEYAQRFLLVFGGRYYKHGN
Ga0208667_1000049393300025070MarineMIFSESDRGHRIVIDSYKKADEAYQWCSDNIPLTEWTVVQDENAESFYFERDEYAQQFLLVFGGRYYKHGN
Ga0208792_103273933300025085MarineMIFSESDRGHRIVIDSYKKADEAYIWCSDNIPLSEWTVVQDENAESFYFERDEYAQNFLLVFGGRYYKHG
Ga0208013_102917533300025103MarineMIFSESDRGHRIVIDSYKKADEAYQWCSDNIPLSEWTVVQDENAESFYFERDEYAQQFLLVFGGRYYKHGN
Ga0208013_105315333300025103MarineVIDSYKKADEAYIWCSDNIPLSEWTVVQDENAESFYFERDEYAQNFLLVFGGRYYKHG
Ga0208793_108679323300025108MarineMIFSESDRGHRIVIDSYKKADEAYQWCSDNIPLTEWTVLQDENAESFYFERDEYAQRFLLVFGGRYYKHG
Ga0208467_100142813300025265Deep OceanHRVVVHAYKKADEAYLWCSDNLPLSEWTVVQDENAESFYFENEQDAQNFLLLFGGRYYKHGG
Ga0208814_103412223300025276Deep OceanMTSSKHRVVIDAYKQGDIAFKWCADNIPLSEWSTLPSAVGEWFYFKDEKHVQNFLLVNGGRYYKNGK
Ga0209494_107537223300025673Methane Seep MesocosmMTFSKKHRIIIDSYKSGDIAYKWCSDNVPLSEWTSVSDENSDSFYFEDEKYAQNFLLIHGGRYYKDGG
Ga0208406_102696043300026205MarineSKSGHRVVVHAYKKADEAYLWCSDNLPLSEWTVVQDENAESFYFENEQDAQNFLLLFGGRYYKHGG
Ga0208131_112600223300026213MarineMTFSKNHRIVIDSYKSGDTAYKWCSDNIPLSEWTVVSDENSDSFYFDEEQYAQNFLLIHGGRYYKNG
Ga0207991_102134633300026264MarineMIFSDSNNGHRVVIDSYKKGDEAYQWCSDHLPLSEWTVVSDENGDSFYFEEEQYAQNFLLVHGGRYYKHGG
Ga0228647_110746423300026505SeawaterMIFSESDRGHKIVIDSYTKADEAYRWCAENVPFLEWTVVQEENGEMFYFEKDGYAQNFLLMFGGRYYKHGG
Ga0209482_105381223300027668MarineMTFSKNHRIIIDSYKSGDIAYKWCADNVPLAEWTAVPSANGDSFYFEDEKYAQNFLLIHGGRYYSNG
Ga0209482_110056623300027668MarineMTFSKKHRIIIDSYKSGDIAYQWCSDNVPLSEWTSVSDENSDSFYFEDEKYAQNFLLIHGGRYYKNG
Ga0209482_119966813300027668MarineMTFSKNHRIIIDAYKSGDIAYKWCADNVPLSEWTAVASANGDSFYFEDEKYAQNFLLIHGGRYYK
Ga0209482_122443413300027668MarineIDSYKSGDIAYKWCADNVPLAEWTAVPSANGDSFYFEDEKYAQNFLLIHGGRYYSNG
Ga0209383_101880033300027672MarineMIFSKKHRIVIDSYKSGDLAYKWCSDNVPLSEWTSVSDENSDSFYFEDEKYAQNFLLIHGGRYYKNG
Ga0209383_110815623300027672MarineMTFSKKHRIIIDSCKLGTAAYKWCADNVPTLEWTAVSDENCDSFYFDKEKHVQNFLLVHGGRYYKNG
Ga0209554_120191023300027685MarineMIFSDSNNGHRVVIDSYKKGDDAYQWCSDHLPLSEWTVVSDENGDSFYFEEEQYAQNFLLVHGGRYYKHGG
Ga0209815_125174323300027714MarineTRWQVMTFSKNHRIIIDSYKSGDIAYKWCADNVPLAEWTAVPSANGDSFYFEDEKYAQNFLLIHGGRYYSNG
Ga0209091_1000770443300027801MarineMTFSKHRVVIDAYKEGDIAYKWCADNVPLSEWTAVPSANGDSFYFEDEKYAQNFLLIHGGRYYKNG
Ga0209035_1007676433300027827MarineMIFSDSVSGHKIVIDSYKKADEAYQWCSDNIPLLEWTVVQDENGEMFYFEKDGHAQNFLLVFGGRYYKHG
Ga0257107_100867643300028192MarineMTFSKNHRIIIDSYKKGDDAYQWCSDNVPLSEWTSVSDENSDSFYFEDEQYAQNFLLVHGGRYYKNG
Ga0257107_107117123300028192MarineMIFSDSENGHKIVIHAYKKADEAYLWCSENIPLSEWTVVQDENAETFYFEDEQHAQNFLLMFGGRYYKHGG
Ga0257107_110377423300028192MarineMIFSESDRGHRIVIDSYKKADEAYIWCSDNIPLSEWTVVQDENAESFYFERDEYAQQFLLVFGGRYYKHG
Ga0233394_112211313300028391SeawaterMIFSESDRGHRIVIDSYKKADEAYIWCSDNIPLTEWTVLQDENAESFYFERDEYAQRFLLVFGGRYYKHG
Ga0308021_1004806933300031141MarineMIFSDSDSGHKIVIESYKKADEAYQWCSDNIPLLDWTVVQDENGEMFYFEKEKYAQNFLLVFGGRYYKHGG
Ga0308021_1025383123300031141MarineMTFSKKHRIIIDSCKQGTAAYKWCADNVPILEWTAVSDENCDSFYFDKEKHVQNFLLVHGGRYYKYGG
Ga0308007_10000790193300031599MarineMTFSKKHRVVIDSCDVGMTAYGWCADNIPALSWTVVSDENCDSFYFEEDSHAQNFLLVHGGRHYKHGG
Ga0308007_1002373563300031599MarineVMIFSDSDSGHKIVIESYKKADEAYQWCSDNIPLLDWTVVQDENGEMFYFEKEKYAQNFLLVFGGRYYKHGG
Ga0308007_1016360833300031599MarineKNHRIIIDSYKSGDIAYKWCADNVPLAEWTAVPSANGDSFYFEDEKYAQNFLLIHGGRYYSNG
Ga0307993_102824933300031602MarineKHRVVIDSCDVGMTAYGWCADNIPALSWTVVSDENCDSFYFEEDSHAQNFLLVHGGRHYKHGG
Ga0307993_114943023300031602MarineMTSSKHRVVIDAYKQGDIAFKWCADNIPLSEWSTLPSAVGEWFYFKDEKH
Ga0308005_1008616333300031656MarineMTSSKHRVVIDAYKQGDIAFKWCADNIPLSEWSTLPSAVGEWFYFKDEKHVQ
Ga0307984_107583123300031658MarineMTFSKNHRVVIDSCDLGMTAYGWCADNIPALSWTVVSDENCDSFYFEEDSHAQNFLLVHGGRHYKHGG
Ga0307984_108455413300031658MarineMTFSKNHRIIIDSYKSGDIAYKWCADNVPLAEWTAVPSANGDSFYFEDEKYAQNFLLIHG
Ga0307994_118211023300031660MarineMTFSKNHRVVIDSCDLGMTAYGWCADNIPALSWTVVSDENCDSFYFEEDSHAQNFLLVHGGRHYKHG
Ga0307994_124942623300031660MarineMTFSKKHRIIIDSCKLGTVAYKWCADNVPTLEWTAVSDENCDSFYFDNEKHVQNFLLVHGGRYYKNGD
Ga0315328_1002184573300031757SeawaterMIFSESDRGHRIVIDSYKKADEAYLWCSDNIPLSEWTVVQDENAESFYFERDEYAQQFLLVFGGRYYKHGG
Ga0315326_1066207813300031775SeawaterIDSYKKADEAYLWCSDNIPLSEWTVVQDENAESFYFERDEYAQQFLLVFGGRYYKHGD
Ga0315318_1007865733300031886SeawaterMIFSESNRGHRIVIDSYRKADEAYIWCSDNIPLSEWTVVQDENAESFYFERDEYAQQFLLVFGGRYYKHG
Ga0315324_1012333333300032019SeawaterVVIDSYKKGDDAYQWCSDNLPLSEWTVVQDENAESFYFEEEQYAQNFLLVFGGRYYKHGG
Ga0315327_1062716023300032032SeawaterMIFSDSENGHKIVIHAYKKADEAYLWCSDNLPLSEWTVVQDENAESFYFENEQHAQNFLLLFGGRYYKHG
Ga0372840_038818_695_8983300034695SeawaterMTFSKHRVVIDAYKQSDIAYKWCADNIPLSEWSTVPSAVGEWFYFKNEKHVQNFLLVNGGRYYKNGH


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