Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1000006 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1000006 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	110075
Total Scaffold Genes	174 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	111 (63.79%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

110075

Total Scaffold Genes

174 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

111 (63.79%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009045	Metagenome / Metatranscriptome	324	N
F040864	Metagenome / Metatranscriptome	161	Y
F043692	Metagenome	156	N
F052208	Metagenome / Metatranscriptome	143	N
F063076	Metagenome / Metatranscriptome	130	Y
F066152	Metagenome / Metatranscriptome	127	N
F070578	Metagenome	123	N
F079945	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_1000006103	F079945	N/A	MVEYQGKKVTVRTKVKHELSDVVIAWVNQVVKNPEDVIVDWSQMTTKEQEEFERQAFLLEGKLHKVIGVAFAEIISSSNYTKKI
Ga0208667_1000006117	F066152	N/A	MIGMLFPSIPQYLCVYEIDSNLHMVVLQARNSDTAELFALLRSMEESSDYTFGKILDVSEIDPAHHISLTIH
Ga0208667_1000006124	F040864	AGGA	MENTARYKGWFWDHVNKRMYRWHELELLMKERDIKEKKNADQLKNQGSDV
Ga0208667_1000006172	F043692	AGGGGG	VSILKSEIDLKGTKPDYLRTTKNLYSHSVDGYKLFFSYQTLVAIDDLISVNYWSNTTARHLYWINPNKDIRVENFDELARKILGKAQLLEKERLPLANISAISSIFSIMANAETEESIRASNEQRKRFYLTQEGISFPSDWDSLSVADQKKRLDMCDYIGLNKATEVLNNSTSKTI
Ga0208667_100000678	F052208	N/A	MSTIWVADQLKKRLKEKKDDTQSQLLNGVQSFDDYQYLRGRYNSLVDVEEELRELLERIEENDEEQSIGT
Ga0208667_100000686	F009045	AGG	MNKLNSTFKPSNTFRGSRHIVKGQIIQGDDFEVDGIRRAFWSNPDKTHSCHLFRLKGGSVIDRVTVDSFENETLNDFIARTETILIGGKK
Ga0208667_100000689	F070578	N/A	MSLTLVEFDPIQAKKDREIELQKRRKQYPLPLNSKTREEIVRRCAILRHMGDDGIGCDYNQSNDQQLVDHYSWVLDEEHDDLLADEFVIKL
Ga0208667_100000697	F063076	AGGAG	MSKTIYINREDCYGNFETVDEFTEGRKYAKEMLTEYRFGDRSAYYYMSQRCCKDWLMETEDEA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1000006

Overview

Ecosystem & Geography

Associated Families

Sequences