Scaffold Ga0207887_1003629

Overview

Basic Information

• Taxon OID: 3300025069
• Scaffold ID: Ga0207887_1003629
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2392
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → unclassified Chromatiaceae → Chromatiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9853
  • Long. (^o): -145.0838

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007828	Metagenome	344	Y
F042020	Metagenome / Metatranscriptome	159	N
F094399	Metagenome	106	N
F098066	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207887_10036292	F007828	AGGA	MLNSLTTIVRSNQNATMIRVGNGSSAIYTIYDLKTQSNTYTGTLNATKKAWNKHYRNSRQFVTRSGANHRYLGAL
Ga0207887_10036293	F094399	N/A	MSKRNQRTPQEIIAETEARLVRLRLREAQASAKSDPTLMPLLQQVDDLNKDIREAKKLLGEGPQSGSSRIAKHQAWIDKISLEMNEAHDALEFAEANKASVQAEVVKATMAYLETSKEISAEG
Ga0207887_10036294	F098066	N/A	MNEFDELLSSEVDKALQYLLDHEMISMEWDPDREEMVFYMTDKQRAMPNPEDWDEAL
Ga0207887_10036295	F042020	AGGA	MKPQFDLFESTFEEWLDELSLINHDESPGLRTVLNDLYMEGHTPLDARDALEVYWPEWHEELTYMEEHPIG