Basic Information | |
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Taxon OID | 3300025066 Open in IMG/M |
Scaffold ID | Ga0208012_1001096 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7809 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (62.50%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.51 | Long. (o) | -76.2 | Alt. (m) | Depth (m) | 100 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F015796 | Metagenome / Metatranscriptome | 252 | N |
F023123 | Metagenome | 211 | Y |
F057690 | Metagenome | 136 | Y |
F059066 | Metagenome | 134 | Y |
F084709 | Metagenome / Metatranscriptome | 112 | Y |
F087295 | Metagenome | 110 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208012_10010961 | F087295 | N/A | MNRDKEIKRITKKYKSGELEPRKDLPEDLQIAIRTFMEQVVIMEEYDTDFINGEYMA |
Ga0208012_100109617 | F015796 | AGG | MNKQQMKRYDDTRDRVLIREWFKLKGVVLEHGSKYGVDLEGKDYDIEISHLSFSNLWEQWKKENRFRIEIRKRNHYWDGIYNESNTTHFVQLNKSGHELLVYPQDLIMEYSNNEVELGYLRSKGFNLKERTFMSIPFNKGKDVIKRYEI |
Ga0208012_100109619 | F059066 | N/A | MNMKIKNITEEEYNHYFHKWLYYYGGASDVVSLKQYIKDYDSDDYGDIDKYDTGLCPCVMCLDGDIDG |
Ga0208012_100109622 | F084709 | N/A | MNKNRKYNIGGVMVETDNSVPNKFRVLKMAMDNWARKNHLLSIDSPKGRKYGDDVDRYNKLKELFEFHKPNFIKPFHMVELNKMFKMYNNG |
Ga0208012_100109623 | F057690 | AGGGGG | MKEWYHIKATHPTIGVVRFWLSQESEDDVRELVIKKGYTGIKWIRQETPPFI |
Ga0208012_10010964 | F023123 | AGGAG | MDRAYFKEKKTGKKSKGTHTICCGQDKDRETLNKNKKADWELIEQHCEDHLTHYPSTIDITPICCKVCGRLIKYTCVIDTDRERRKTIDTE |
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