Scaffold Ga0208012_1001096

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1001096
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7809
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (62.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015796	Metagenome / Metatranscriptome	252	N
F023123	Metagenome	211	Y
F057690	Metagenome	136	Y
F059066	Metagenome	134	Y
F084709	Metagenome / Metatranscriptome	112	Y
F087295	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_10010961	F087295	N/A	MNRDKEIKRITKKYKSGELEPRKDLPEDLQIAIRTFMEQVVIMEEYDTDFINGEYMA
Ga0208012_100109617	F015796	AGG	MNKQQMKRYDDTRDRVLIREWFKLKGVVLEHGSKYGVDLEGKDYDIEISHLSFSNLWEQWKKENRFRIEIRKRNHYWDGIYNESNTTHFVQLNKSGHELLVYPQDLIMEYSNNEVELGYLRSKGFNLKERTFMSIPFNKGKDVIKRYEI
Ga0208012_100109619	F059066	N/A	MNMKIKNITEEEYNHYFHKWLYYYGGASDVVSLKQYIKDYDSDDYGDIDKYDTGLCPCVMCLDGDIDG
Ga0208012_100109622	F084709	N/A	MNKNRKYNIGGVMVETDNSVPNKFRVLKMAMDNWARKNHLLSIDSPKGRKYGDDVDRYNKLKELFEFHKPNFIKPFHMVELNKMFKMYNNG
Ga0208012_100109623	F057690	AGGGGG	MKEWYHIKATHPTIGVVRFWLSQESEDDVRELVIKKGYTGIKWIRQETPPFI
Ga0208012_10010964	F023123	AGGAG	MDRAYFKEKKTGKKSKGTHTICCGQDKDRETLNKNKKADWELIEQHCEDHLTHYPSTIDITPICCKVCGRLIKYTCVIDTDRERRKTIDTE