Metagenome Family F087295

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087295
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	50 residues
Representative Sequence	MNKDKEVKRITKKYKAGKLEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYIN
Number of Associated Samples	77
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	20.00 %
% of genes near scaffold ends (potentially truncated)	99.09 %
% of genes from short scaffolds (< 2000 bps)	96.36 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (78.182 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (73.636 % of family members)
Environment Ontology (ENVO)	Unclassified (98.182 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (93.636 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 1JGI25133J35611_101046411 2JGI25133J35611_101666211 3JGI25134J35505_100839873 4JGI25130J35507_10923802 5JGI25136J39404_10462851 6Ga0066858_101438671 7Ga0066858_101609701 8Ga0066858_101665381 9Ga0066826_101282053 10Ga0066859_100180345 11Ga0066859_101768961 12Ga0066850_100300715 13Ga0066850_102471891 14Ga0066375_101089191 15Ga0082018_10590672 16Ga0068503_101337401 17Ga0098033_10551985 18Ga0098033_11251051 19Ga0098035_11927321 20Ga0098058_10891071 21Ga0098058_11651731 22Ga0098040_11060753 23Ga0098039_10440625 24Ga0098039_11227193 25Ga0098039_12683762 26Ga0098044_12245193 27Ga0098054_12370171 28Ga0098055_12296531 29Ga0066376_103723833 30Ga0098053_10178081 31Ga0098053_10589383 32Ga0098057_10635951 33Ga0098034_10355271 34Ga0098034_10670823 35Ga0098034_11216031 36Ga0098034_11386391 37Ga0098034_11558913 38Ga0114898_10350987 39Ga0114905_11911661 40Ga0114908_11936343 41Ga0105173_10517893 42Ga0098047_103477451 43Ga0163108_104470853 44Ga0163108_107092523 45Ga0181367_10249621 46Ga0181371_10689502 47Ga0181432_100636110 48Ga0181432_11724641 49Ga0181432_12544143 50Ga0211568_11264702 51Ga0211571_10312694 52Ga0211531_11332411 53Ga0211538_11526443 54Ga0211538_12374301 55Ga0211703_100796001 56Ga0232646_10863361 57Ga0187833_106493233 58Ga0187827_103500523 59Ga0208012_10010961 60Ga0208012_10078987 61Ga0208012_10393813 62Ga0208920_10393061 63Ga0208668_10792881 64Ga0208156_10295195 65Ga0208011_10586293 66Ga0208010_10206805 67Ga0208013_10403091 68Ga0209349_10741033 69Ga0209349_11576541 70Ga0208790_10643241 71Ga0209434_10629223 72Ga0209128_10452056 73Ga0209128_11000171 74Ga0209128_11382001 75Ga0209128_11569881 76Ga0208684_11311721 77Ga0209757_100258241 78Ga0208881_10600044 79Ga0208128_10612943 80Ga0207986_10978513 81Ga0208638_10831631 82Ga0208894_10427831 83Ga0208894_11721112 84Ga0207984_10516561 85Ga0208521_10801111 86Ga0207989_11115361 87Ga0207989_11236531 88Ga0208642_10496893 89Ga0208132_10681391 90Ga0208132_11137111 91Ga0208409_10385593 92Ga0208639_10643131 93Ga0208639_10772721 94Ga0208639_11520871 95Ga0208639_11663032 96Ga0208896_11364941 97Ga0208524_10609573 98Ga0208524_10693661 99Ga0207990_11063582 100Ga0207992_10732043 101Ga0208641_10737021 102Ga0256382_11772421 103Ga0257108_10666731 104Ga0257108_10777083 105Ga0315329_103728043 106Ga0310345_112221301 107Ga0310345_117735881 108Ga0315334_116092931 109Ga0310342_1022895573 110Ga0372840_122159_1_168
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 1JGI25133J35611_101046411 2JGI25133J35611_101666211 3JGI25136J39404_10462851 4Ga0066858_101609701 5Ga0105173_10517893 6Ga0098047_103477451 7Ga0163108_104470853 8Ga0209128_11382001
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 1JGI25133J35611_101046411 2JGI25133J35611_101666211 3JGI25136J39404_10462851 4Ga0066858_101609701 5Ga0105173_10517893 6Ga0098047_103477451 7Ga0163108_104470853 8Ga0209128_11382001
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 63.46% β-sheet: 0.00% Coil/Unstructured: 36.54%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF02229	PC4	1.82
PF07883	Cupin_2	1.82
PF02401	LYTB	0.91
PF01467	CTP_transf_like	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0761	4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH	Lipid transport and metabolism [I]	1.82

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	21.82 %
Unclassified	root	N/A	78.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	13.64 %
Unclassified	root	N/A	78.18 %
Viruses	superkingdom	All Organisms → Viruses	8.18 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	12.73 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.18 %
Unclassified	root	N/A	78.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.91 %
DPANN group	clade	All Organisms → cellular organisms → Archaea → DPANN group	12.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.18 %
Unclassified	root	N/A	78.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.91 %
Candidatus Woesearchaeota	phylum	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota	12.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.18 %
Unclassified	root	N/A	78.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.91 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	12.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.18 %
Unclassified	root	N/A	78.18 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002514\|JGI25133J35611_10104641	Not Available	829	Open in IMG/M
3300002514\|JGI25133J35611_10166621	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	595	Open in IMG/M
3300002518\|JGI25134J35505_10083987	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	720	Open in IMG/M
3300002519\|JGI25130J35507_1092380	Not Available	554	Open in IMG/M
3300002760\|JGI25136J39404_1046285	Not Available	806	Open in IMG/M
3300005398\|Ga0066858_10143867	Not Available	690	Open in IMG/M
3300005398\|Ga0066858_10160970	Not Available	649	Open in IMG/M
3300005398\|Ga0066858_10166538	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	636	Open in IMG/M
3300005424\|Ga0066826_10128205	Not Available	908	Open in IMG/M
3300005425\|Ga0066859_10018034	All Organisms → cellular organisms → Bacteria	2159	Open in IMG/M

Showing 1 to 10 of 110 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	0.91%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.82%
Oceanic	Environmental → Aquatic → Marine → Oceanic	88.18%
Pelagic	Environmental → Aquatic → Marine → Pelagic	0.91%
Strait	Environmental → Aquatic → Marine → Strait	2.73%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.45%

Habitat	Taxonomy	Distribution
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	0.91%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	1.82%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	85.45%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.45%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	3.64%
Hydrothermal Vent Fluids	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Fluids	0.91%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	73.64%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	5.45%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.82%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	0.91%
Marine Oceanic	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic	0.91%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	5.45%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	2.73%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	1.82%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	1.82%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.91%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002514	Marine viral communities from the Pacific Ocean - ETNP_6_85	Environmental	Open in IMG/M
3300002518	Marine viral communities from the Pacific Ocean - ETNP_6_100	Environmental	Open in IMG/M
3300002519	Marine viral communities from the Pacific Ocean - ETNP_2_300	Environmental	Open in IMG/M
3300002760	Marine viral communities from the Pacific Ocean - ETNP_6_1000	Environmental	Open in IMG/M
3300005398	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201	Environmental	Open in IMG/M
3300005424	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV49	Environmental	Open in IMG/M
3300005425	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV199	Environmental	Open in IMG/M
3300005605	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67	Environmental	Open in IMG/M
3300006019	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_A	Environmental	Open in IMG/M
3300006091	Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP125	Environmental	Open in IMG/M

Showing 1 to 10 of 77 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25133J35611_101046411	3300002514	Marine	MNKDKEIKRITKKYKAGELEPRKDLPEDLQIAIRTFMEQVVIMEEYDTIL*
JGI25133J35611_101666211	3300002514	Marine	MNKDKKLKKITKKYKAGELEPREDLPEDLKVAIKTFMEQAVIMEEYDTDFINGEYMAN
JGI25134J35505_100839873	3300002518	Marine	MNKDKEIKRITKKYKDGELEPRKDLPEDLKIAIRTFMEQVVIMEEYDTD
JGI25130J35507_10923802	3300002519	Marine	MNKDKEVKRITKKYKAGELEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYI
JGI25136J39404_10462851	3300002760	Marine	MNKDKEIKRITKKYKAGKLEPREDLPEDLKVAIKTFMEQAVIM
Ga0066858_101438671	3300005398	Marine	MSKDKDMKVITKKYRAGKLEPREDLPEDLKIAIRTFMEQAVIM
Ga0066858_101609701	3300005398	Marine	MNKDKEIKRITKKYRAGKLEPREELPEDLKIAIKTFMEQVVIMEEYNTDFINGEYMANLIKAFSKYP
Ga0066858_101665381	3300005398	Marine	MNKDKEIKRITKKYKDGKLEPREDLPEDLKIAIRTFMEQAVIMEEY
Ga0066826_101282053	3300005424	Marine	MNKDKEVKRITKKYKAGKLEPREDLPEDLKIAIRTFMEQAV
Ga0066859_100180345	3300005425	Marine	MNKDKEVKRITKKYKAGELEPREDLPEDLKIAIRTFMEQAVIMEEYD
Ga0066859_101768961	3300005425	Marine	MNRDKEIKKITKKYKAGKLEPRKDLPEDLKIAIRTFMEQVVIMEEYDTDYIN
Ga0066850_100300715	3300005605	Marine	MNKERAVKKITKKYKDGKLEPREDLPEDLKIAIKTFMEQAVIME
Ga0066850_102471891	3300005605	Marine	MNKDKEVKRITKKYKAGKLEPREDLPEDLKIAIRTFMEQAVIMEEY
Ga0066375_101089191	3300006019	Marine	MNKDKEVKRITKKYKAGKLEPREELPEDLKIAIKTFM
Ga0082018_10590672	3300006091	Marine	MNKDKEIKRITKKYKAGKLEPREDLPEDLKIAIRTFMEQAVIMEEYDTDFI
Ga0068503_101337401	3300006340	Marine	VNKDKQLKKITKKYRAGKLEPREDLPEDLKIAIKTFMEQAVIME
Ga0098033_10551985	3300006736	Marine	MNKDKEIKRITKKYKDGKLEPREDLPEDLKIAIKTFMEQAVIMEEYDTDYINGEY
Ga0098033_11251051	3300006736	Marine	MNKDKEIKRITKKYKAGELEPREELPEDLKIAIRTFMEQVVIVEEYDTDYINGEYMANLIKAFSKYPE
Ga0098035_11927321	3300006738	Marine	MNKDKEIKRITKKYKDGELEPRKDLPEDLKIAIRTFMEQVVIMEEYDTDYI
Ga0098058_10891071	3300006750	Marine	MNKDKEIKKITKKYKDGKLEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYI
Ga0098058_11651731	3300006750	Marine	MNRDKEIKRITKKYKSGELEPRKDLPEDLQIAIRTFMEQVVIMEEYDTDFING
Ga0098040_11060753	3300006751	Marine	MNKDKEVKRITKKYKAGELEPREDLPEDLKIAIRTFMEQAVIME
Ga0098039_10440625	3300006753	Marine	MNKDKEIKKITKKYKDGKLEPREDLPEDLKIAIKTFMEQAVIMEEYDTDYINGEYMANLIKAFSKYP
Ga0098039_11227193	3300006753	Marine	MNKDKEIKRITKKYKAGELEPREELPEDLKIAIRTFMEQVVIMEEYDTDYINGEYMA
Ga0098039_12683762	3300006753	Marine	MSKDKDMKVITKKYKAGKLEPREDLPEDLKVAIKIFMEQAVIMEEYNTDFINGEYMAN
Ga0098044_12245193	3300006754	Marine	MNKDKEIKRITKKYKDGKLEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYINGE
Ga0098054_12370171	3300006789	Marine	MNRDKEIKRITKKYKSGELEPRKDLPEDLQIAIRTFMEQVVIMEEYDTDFINGEYM
Ga0098055_12296531	3300006793	Marine	MNRDKEIKRITKKYKAGELEPRKDLPEDLQIAIRTFMEQVVIMEEYDTDFINGEY
Ga0066376_103723833	3300006900	Marine	MNKDKEIKRITKKYKAGKLEPREDLPEDLKIAIRTFM
Ga0098053_10178081	3300006923	Marine	MNKDKEVKRITKKYKAGKLEPREDLPEDLKIAIRTFMEQ
Ga0098053_10589383	3300006923	Marine	MNRDKEIKRITKKYKAGELEPRKDLPEDLQIAIRTFMEQ
Ga0098057_10635951	3300006926	Marine	MNKDKEIKRITKKYKAGELEPREELPEDLKIAIRTFMEQVVIMEEYDTDYINGEYMANLIKAF
Ga0098034_10355271	3300006927	Marine	MNKDKEIKRITKKYKDGKLEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYINGEYM
Ga0098034_10670823	3300006927	Marine	MNRDKEIKKITNKYKAGELEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYINGEYMAN
Ga0098034_11216031	3300006927	Marine	MNKDKEVKRITKKYKAGKLEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYINGEYM
Ga0098034_11386391	3300006927	Marine	MNKDKEVKRITKKYKAGKLEPRKDLPEDLKIAIRTFMEQVVIMEEYDTDYINGEYM
Ga0098034_11558913	3300006927	Marine	MNRDKEIKRITKKYKAGKLEPRKDLPEDLQIAIRTFMEQVVIMEEYDTDYI
Ga0114898_10350987	3300008216	Deep Ocean	MNKDKEIKRITKKYKAGKLEPREDLPEDLKIAIKTFMEQAVIMEEYDTDYI
Ga0114905_11911661	3300008219	Deep Ocean	MNKDKQLKKITKKYKAGKLEPREDLPEDLKVAIKTFMEQAVIMEEYN
Ga0114908_11936343	3300009418	Deep Ocean	MNKDKQLKKITKKYKAGKLEPRDDLPEDLKIAIRTFMEQAVIMEEYN
Ga0105173_10517893	3300009622	Marine Oceanic	MSKDRDMKVITKKYMEGKLEPRKDLPEDLKIAIRTFMEQAVIMEEY
Ga0098047_103477451	3300010155	Marine	MSKDKDMKVITKKYKAGKLEPREDLPEDLKVAIKTF
Ga0163108_104470853	3300012950	Seawater	MNKDRQLKKITNKYKDGELEPRDDLPEDLKIAISTFMEQ
Ga0163108_107092523	3300012950	Seawater	MNKDKEVKRITKKYKAGELEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYINGEYMANLI
Ga0181367_10249621	3300017703	Marine	MNRDKEIKRITKKYKSGELEPRKDLPEDLQIAIRTFMEQVVIMEEYDTD
Ga0181371_10689502	3300017704	Marine	MNRDKQLKKITKKYKDGELEPRDDLPEDLKIAISTFMEQVVIMEEYDTDFINGEYMANLI
Ga0181432_100636110	3300017775	Seawater	MNKDKEIKRITKKYKAGKLEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYING
Ga0181432_11724641	3300017775	Seawater	MNRDKEIKKITKKYKAGKLEPREDLPEDLKIAIKTFMEQAVIMEEYDTDY
Ga0181432_12544143	3300017775	Seawater	MNKDKEVKRITKKYKAGKLEPREDLPEDLKIAIKTFMEQ
Ga0211568_11264702	3300020277	Marine	MNKDKEVKRITKKYKAGELEPREDLPEDLKIAIRTFMEQAVIMEEYDTDFINGEYMANLIKAFSK
Ga0211571_10312694	3300020338	Marine	MSKDKDMKVITKKYKAGKLEPREDLPEDLKVAIKTFMEQAVIMEEYNTDFINGEYMANLIKAFSKYPEHS
Ga0211531_11332411	3300020361	Marine	MSKDKDMKVITKKYRAGKLEPREDLPEDLKIAIRTFMEQAVIMEEYNTDYINGEYMANLIEAFSKYPE
Ga0211538_11526443	3300020364	Marine	MNKDKEIKRITKKYKDGELEPREDLPEDLKIAIRTFM
Ga0211538_12374301	3300020364	Marine	MNKDKEVKRITKKYKAGKLEPRKDLPEDLKIAIRTFM
Ga0211703_100796001	3300020367	Marine	VNKDKQLKKITKKYRAGKLEPREDLPEDLKIAIKTFMEQAVIMEEYDTDFINGEYMANL
Ga0232646_10863361	3300021978	Hydrothermal Vent Fluids	MSKDKDMKVITNKYKAGKLEPREDLPEDLKIAIRTFMEQAVIMEEYNTDYINGEYMANLINAFSKYPE
Ga0187833_106493233	3300022225	Seawater	MCEFEKMNKDKRLKKITKKYKDGELEPRDDLPEDLKIAISTFME
Ga0187827_103500523	3300022227	Seawater	MNKDKEVKRITKKYKAGELEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYINGEYMAN
Ga0208012_10010961	3300025066	Marine	MNRDKEIKRITKKYKSGELEPRKDLPEDLQIAIRTFMEQVVIMEEYDTDFINGEYMA
Ga0208012_10078987	3300025066	Marine	MNKDKEVKRITKKYKAGKLEPREDLPEDLKIAIRTFMEQA
Ga0208012_10393813	3300025066	Marine	MNRDKEIKRITKKYKAGELEPRKDLPEDLQIAIRTFMEQVVIMEEYDTDFINGEYMA
Ga0208920_10393061	3300025072	Marine	MNKDKEVKRITKKYKAGKLEPREDLPEDLKIAIRTFM
Ga0208668_10792881	3300025078	Marine	MNKDKEVKRITKKYKAGKLEPRKDLPEDLQIAIRTFMEQVVIMEEYDTDYINGEYMANL
Ga0208156_10295195	3300025082	Marine	MNKDKEIKKITKKYKDGKLEPREDLPEDLKIAIKTFMEQAVIMEEYDTDYINGEYMANLIKAF
Ga0208011_10586293	3300025096	Marine	MNKDKEVKRITKKYKAGELEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYINGEY
Ga0208010_10206805	3300025097	Marine	MNKDKEIKRITKKYKDGELEPRKDLPEDLKIAIRTFMEQVVIMEEYDTDY
Ga0208013_10403091	3300025103	Marine	MNKDKEVKRITKKYKAGELEPREDLPEDLKIAIRTFMEQAVIMEEY
Ga0209349_10741033	3300025112	Marine	MNKDKEVKRITKKYKAGKLEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYIN
Ga0209349_11576541	3300025112	Marine	MNKDKEVKRITKKYKAGKLEPRKDLPEDLKIAIRTFMEQVVIMEEYDTDYINGEYMANL
Ga0208790_10643241	3300025118	Marine	MNRDKEIKRITKKYKAGELEPRKDLPEDLQIAIRTFMEQV
Ga0209434_10629223	3300025122	Marine	MNRDKEIKRITKKYKAGELEPRKDLPEDLQIAIRTFMEQVVIMEEYDTDYINGEYM
Ga0209128_10452056	3300025131	Marine	MNKDKEIKRITKKYKDGELEPRKDLPEDLKIAIRTFMEQVVIMEEYDT
Ga0209128_11000171	3300025131	Marine	MNKDKEVKRITKKYKAGELEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYINGEYMANL
Ga0209128_11382001	3300025131	Marine	MCEFEKMNKDKEIKKITKKYKDGELEPREDLPEDLKI
Ga0209128_11569881	3300025131	Marine	MNKDKEVKRITKKYKAGKLEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYINGEYMANL
Ga0208684_11311721	3300025305	Deep Ocean	MNKDKQLKKITKKYKAGKLEPRDDLPEDLKIAIRTFMEQAVIM
Ga0209757_100258241	3300025873	Marine	MNKDKEIKRITKKYKAGKLEPREDLPEDLKIAIRTFMEQAVI
Ga0208881_10600044	3300026084	Marine	MNKDKEIKRITKKYKAGKLEPREDLPEDLKIAIRTFMEQAVIMEEYDTDY
Ga0208128_10612943	3300026186	Marine	MNKDKEVKRITKKYKAGELEPREDLPEDLKIAIRTFMEQAVIMEEYDTD
Ga0207986_10978513	3300026192	Marine	MNKDKEVKRITKKYKAGKLEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYINGEYMAN
Ga0208638_10831631	3300026199	Marine	MNKDKEVKRITKKYKAGKLEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYING
Ga0208894_10427831	3300026200	Marine	MNKDKEVKRITKKYKAGELEPREDLPEDLKIAIRTF
Ga0208894_11721112	3300026200	Marine	MNRDKEIKRITKKYKAGELEPRKDLPEDLQIAIRTFMEQVVIMEEYDTDYINGEYMANL
Ga0207984_10516561	3300026202	Marine	MNKDKEVKRITKKYKAGELEPREDLPEDLKIAIRTFMEQA
Ga0208521_10801111	3300026204	Marine	MNKDKEVKRITKKYKAGELEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYINGE
Ga0207989_11115361	3300026209	Marine	MNKDKEVKRITKKYKAGKLEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYINGEY
Ga0207989_11236531	3300026209	Marine	MNRDKEIKRITKKYKSGELEPRKDLPEDLQIAIRTFMEQVVIMEEYDTDFINGE
Ga0208642_10496893	3300026210	Marine	MNKDKEVKRITKKYKAGKLEPREDLPEDLKIAIRTFMEQAVIMEE
Ga0208132_10681391	3300026211	Marine	MNKDKEVKRITKKYKAGELEPREDLPEDLKIAIRTFMEQAVIMEEYNTDYINGEYMA
Ga0208132_11137111	3300026211	Marine	MNRDKEIKKITKKYKAGKLEPRKDLPEDLKIAIRTFMEQVVIM
Ga0208409_10385593	3300026212	Marine	MNKDKEVKRITKKYKAGKLEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYINGE
Ga0208639_10643131	3300026256	Marine	MNKDKEVKRITKKYKAGELEPREDLPEDLKIAIRTFMEQAVIMEEYDTDY
Ga0208639_10772721	3300026256	Marine	MNKDKEVKRITKKYKAGELEPREDLPEDLKIAIRTFMEQAVI
Ga0208639_11520871	3300026256	Marine	MNRDKQLKKITKKYKDGELEPRDDLPEDLKIAISTFMEQAVIMEEYDTDFINGEYMANLIKAFSKYP
Ga0208639_11663032	3300026256	Marine	MSKDKDMKVITKKYKAGKLEPREDLPEDLKVAIKTFMEQAVIMEEYNTDFINGEYMANLIKA
Ga0208896_11364941	3300026259	Marine	MNKDKEVKRITKKYKAGELEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYIN
Ga0208524_10609573	3300026261	Marine	MNKDKEVKRITKKYKAGELEPREDLPEDLKIAIRTFMEQAVIMEEYDTDYING
Ga0208524_10693661	3300026261	Marine	MNRDKEIKRITKKYKAGELEPRKDLPEDLQIAIRTFMEQVVIMEEYDTDFING
Ga0207990_11063582	3300026262	Marine	VNKDKQLKKITKKYRAGKLEPREDLPEDLKIAIRTFMEQAVIMEE
Ga0207992_10732043	3300026263	Marine	MNKDKEVKRITKKYKAGELEPREDLPEDLKIAIRTFMEQAVIM
Ga0208641_10737021	3300026268	Marine	MNRDKEIKRITKKYKAGELEPRKDLPEDLQIAIRTFMEQVVIMEEYDTDFINGEYMANLIKAF
Ga0256382_11772421	3300028022	Seawater	VNKDKEVKRITKKYKAGKLEPREDLPEDLKVAIKTFMEQAVIMEEYNTDYIN
Ga0257108_10666731	3300028190	Marine	MNRDKEVKRITKKYKAGKLEPREELPEDLKIAIKTFM
Ga0257108_10777083	3300028190	Marine	MSKDKDMKVITKKYKAGKLEPREDLPEDLKIAIRTFMEQAVIMEEYNT
Ga0315329_103728043	3300032048	Seawater	MNKDKEVKRITKKYKAGKLEPREDLPEDLKIAIKTFMEQAVIMEEYDTDYINGEYMANLI
Ga0310345_112221301	3300032278	Seawater	MSKDKDMKVITKKYKAGKLEPREDLPEDLKVAIKTFMEQAVIMEE
Ga0310345_117735881	3300032278	Seawater	MNKDKEIKRITKKYKAGELEPREDLPEDLKIAIKTFME
Ga0315334_116092931	3300032360	Seawater	MNKDKEVKRITKKYKAGKLEPREDLPEDLKIAIKTFMEQAVIMEEYN
Ga0310342_1022895573	3300032820	Seawater	MNRDKEIKKITNKYKDGKLEPRDDLPEDLKVAIRTFMEQA
Ga0372840_122159_1_168	3300034695	Seawater	VNKDKQLKKITKKYSAGKLEPREDLPEDLKIAIKTFMEQAVIMEEYDTDFINGEYM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F087295

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences