Scaffold Ga0208018_100468

Overview

Basic Information

• Taxon OID: 3300025057
• Scaffold ID: Ga0208018_100468
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10508
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028484	Metagenome / Metatranscriptome	191	Y
F037687	Metagenome / Metatranscriptome	167	Y
F041146	Metagenome / Metatranscriptome	160	Y
F042289	Metagenome / Metatranscriptome	158	N
F084122	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208018_10046813	F042289	GAGG	MIDGIFRIEEVRADECPDEFLTRVGNANVTVWRNRLADYDGKLCFSFPYISWCGDMYVAPDEPMAILVEETWEEASLDIEFDLMKKGLI
Ga0208018_10046814	F084122	AGG	MFYYNVKFTNGESLVIMSDGDPVDEVPVEFQGDVIDVTTICEVSV
Ga0208018_1004683	F028484	GGAGG	MSRQDGQPQIRKIGKEYYLNMFDLLDMLEAFADFSVDEFMSKDEEGLDEFECGWFEGDQARLEHLLNLFSMLIAEKRLEKIDNVEKLFQEFPSEKFIRNRGQNT
Ga0208018_1004684	F037687	GGA	MIFTYDKVKNDIWEVIKDKTDFVYEPSSECDACFDHNEWEYDPEAFGDEPPTCNAHYDGDACRYFYADYRGYSNCDTPACVVGNWFVFEQFSPEDLNVSTWDVLEGQGVKTLMERANVEVSPEALEFLNNMQTFQDTGVSWGNAFEMSVAKAEGTENE
Ga0208018_1004687	F041146	AGAAGG	METIHLYQIDGGYTYWEAYSDLTNNYLFSLDDDDVGDYISQNKDKDIRIYDQEPYNAMYHIHIEMDKWWGRDDYHVDDCPAIHNPQEQLDYLCEGCHAFEKWAKNKTYGDYMKDRFANV