Basic Information | |
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Family ID | F084122 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 112 |
Average Sequence Length | 45 residues |
Representative Sequence | MFYYNVKFTNGESLVILSDGDPVDEVPVEFQGDVIDVTTICEVAV |
Number of Associated Samples | 69 |
Number of Associated Scaffolds | 112 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 66.96 % |
% of genes near scaffold ends (potentially truncated) | 40.18 % |
% of genes from short scaffolds (< 2000 bps) | 91.96 % |
Associated GOLD sequencing projects | 61 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.43 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (71.429 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (50.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (50.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (89.286 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 30.14% Coil/Unstructured: 69.86% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.43 |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Sediment Marine Seawater Seawater Marine Plankton Seawater Aqueous Seawater Freshwater To Marine Saline Gradient Marine Marine Salt Marsh Marine Seawater Pelagic Marine |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
ACM24_10329471 | 3300001833 | Marine Plankton | MFYYEVKFANGESTVILSAGDPVDEIPVEFQGDVTNVDTICEVSPYREVGV* |
ACM2_10160495 | 3300001834 | Marine Plankton | MFYYEVKFANGESTVILSAGDPVDEIPVEFQGDVTNVETICEVSPYREVGV* |
GOS2229_10161632 | 3300001963 | Marine | MFYYNVKFTNGESLVIMSDGDPVNEVPVEFQSDVIDVTTICEVSV* |
Ga0063241_10207574 | 3300003894 | Marine | MFYYNVKFTNGESLVILSDGDPVDEVPVEFQGDVIDVTTICEVTV* |
Ga0055584_1018247431 | 3300004097 | Pelagic Marine | VFYYNLKFINGESLVILSAGDPVDEIPVEFQGDVVNVDTVCEVTV* |
Ga0066605_101605201 | 3300004279 | Marine | MFYYNIKFTNGEDLVIMTDGDPVNEVPVEFQGDVTDVATICEVSV* |
Ga0066605_103326622 | 3300004279 | Marine | MFYYEVKFTNGESLVILADGDPVDEIPVEFQGDVINVDTLFEVAV* |
Ga0066825_101540983 | 3300005510 | Marine | MFYYNVKFTNGESLVIMSDGDPVDEVPVEFQGDVVDVTTICEVAV* |
Ga0075478_100384635 | 3300006026 | Aqueous | MFYYNVKFTNGESLVILSDGDPVNEVPVEFQGDVIDVTTLCEVAV* |
Ga0075478_100583274 | 3300006026 | Aqueous | MFYYNVKFTNGESLVILSEGDPTDEIPAEFQGDITDIQTICEVSA* |
Ga0075478_101433992 | 3300006026 | Aqueous | MFYYNVKFTNGESLVILADGDPVDEIPVEFQGEVVNVETICEVAFA* |
Ga0098073_10053563 | 3300006734 | Marine | MFYYNVKFTNGESLVILSDGDPVDEVPVEFQGDVIDVTTLCEVAV* |
Ga0098073_10153092 | 3300006734 | Marine | MFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVVNVETICEVTFA* |
Ga0098073_10274604 | 3300006734 | Marine | VGRQMFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVTV* |
Ga0098073_10287003 | 3300006734 | Marine | MFYYNVKFTNGESLVIMSDGDPVDEVPVEFQGDVIDVTTICEVSV* |
Ga0098073_10310894 | 3300006734 | Marine | GRQMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVIDVTTLCEVAV* |
Ga0098073_10379982 | 3300006734 | Marine | MFYYNVKFTNGESLVILADGDPVDEIPAEFQGDVIDVTTLCEVAV* |
Ga0098074_10592111 | 3300006790 | Marine | MFYYNVKFTNGETLVIMSDGDPVNEVPVEFQGDVIDVTTICEVAV* |
Ga0098074_10626941 | 3300006790 | Marine | NVKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVTV* |
Ga0075481_100265257 | 3300006868 | Aqueous | MFYYNVKFTNGETLVILSDGDPVDEVPVEFQGDVIDVATICEVSA* |
Ga0075479_100944485 | 3300006870 | Aqueous | MFYYEVKFANGESTVILADGDPVDEIPVEFQGEVVNVDTICEVMV* |
Ga0070746_105002532 | 3300006919 | Aqueous | MFYYNVKFANGESLVILADGDPVDEIPVEFQGEVVNVETICEVAFA* |
Ga0070752_10977523 | 3300007345 | Aqueous | MFYYNVKFTNGETLVILSDGDPVNEVPVEFQGDVIDVTTLCEVAV* |
Ga0070752_11181511 | 3300007345 | Aqueous | RKKGGRKMFYYNVKFTNGETLVILSDGDPVDEVPVEFQGDVIDVATICEVSA* |
Ga0075480_103845331 | 3300008012 | Aqueous | FTNGESLVILSDGDPVNEVPVEFQGDVLDVTTICEVSA* |
Ga0129348_10775031 | 3300010296 | Freshwater To Marine Saline Gradient | MFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVLDVTTICEVAV* |
Ga0129351_11380663 | 3300010300 | Freshwater To Marine Saline Gradient | MFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVAV* |
Ga0163179_110198252 | 3300012953 | Seawater | MFYYEVKFANGERTVVLSAGDPVDEIPVEFQGDVTNVDTICEVSPYREVRV* |
Ga0116836_10303001 | 3300013181 | Marine | MFYYEVKFANGESTVILSAGDPVDEVPVEFQGDVVNVDTICEVSPYREVGV* |
Ga0116824_1017893 | 3300013722 | Marine | MFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVSV* |
Ga0116824_1056952 | 3300013722 | Marine | MFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVIDVTTLCEVAV* |
Ga0182078_109603561 | 3300016747 | Salt Marsh | RKVGRKMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVIDVTTLCEVAV |
Ga0181565_1003128012 | 3300017818 | Salt Marsh | MFYYNVKFTNGESLVILSDGDPVDEVPVEFQGDVIDVTTICEVAV |
Ga0181565_102412961 | 3300017818 | Salt Marsh | ERKVGRKMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVVNVETICEVAFA |
Ga0181565_104479102 | 3300017818 | Salt Marsh | MFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVSA |
Ga0181552_101121473 | 3300017824 | Salt Marsh | MFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVVNVETICEVAVA |
Ga0181552_103433723 | 3300017824 | Salt Marsh | MFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVAV |
Ga0181552_104770111 | 3300017824 | Salt Marsh | GESLVILADGDPVDEIPVEFQGDVVNVETICEVAFA |
Ga0181584_107111522 | 3300017949 | Salt Marsh | MFYYNVKFTNGETLVILSDGDPVDEVPVEFQGDVVDVTTICEVSA |
Ga0181577_105052842 | 3300017951 | Salt Marsh | MFYYNVKFANGESLVILSDGDPVDEVPVEFQGDVIDVTTICEVSA |
Ga0181577_106272581 | 3300017951 | Salt Marsh | MFYYNVKFTNGESLVILSDGDPVDEVPVEFQGDVIDVTTI |
Ga0181577_108168882 | 3300017951 | Salt Marsh | MFYYNVKFTNGESLVILADGDPVEEIPVEFQGDVVNVETICEVAFA |
Ga0181571_109432352 | 3300017957 | Salt Marsh | MFYYNVKFTHGESLVILADGDRVDEIPAEFQGDVIDVTT |
Ga0181582_101100851 | 3300017958 | Salt Marsh | MFYYNVKFTNGESLVILSDGDPVDEVPVEFQGDVVDVTTICEVSA |
Ga0181582_104087263 | 3300017958 | Salt Marsh | MFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGEVIDVTTICEVAV |
Ga0181587_101908103 | 3300017968 | Salt Marsh | MFYYNVKFTNGETLVILSDGDPVNEVPVEFQGDVIDVTTICEVSA |
Ga0181585_102048643 | 3300017969 | Salt Marsh | MFYYNVKFTNGESLVILADGDPVEEIPVEFQGDVIDVTTLCEVAV |
Ga0181585_105328991 | 3300017969 | Salt Marsh | IERKVGRKMFYYNVKFTNGESLVILADGDPVDEIPAEFQGDVIDVTTLCEVAV |
Ga0181585_110391623 | 3300017969 | Salt Marsh | GESLVILADGDPVDEIPVEFQGDVIDVTTLCEVAV |
Ga0181569_101625221 | 3300017986 | Salt Marsh | IERKVGRKMFYYNVKFTNGESLVILADGDPVEEIPVEFQGDVVNVETICEVAFA |
Ga0181569_103751692 | 3300017986 | Salt Marsh | MFYYNVKFTNGESLVIMSDGDPTDEIPVEFQGDITDIQTICEVSA |
Ga0181569_104285161 | 3300017986 | Salt Marsh | MFYYNVKFTNGETLVILSDGDPVDEVPVEFQGDVVDVTTICEVTV |
Ga0181569_105573691 | 3300017986 | Salt Marsh | KFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVSA |
Ga0181579_101230041 | 3300018039 | Salt Marsh | MFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVIDV |
Ga0181579_105978811 | 3300018039 | Salt Marsh | MFYYNVKFTNGESLVIMSAGDPTDEIPVEFQGDITDIQTICEVSA |
Ga0181579_106375181 | 3300018039 | Salt Marsh | GRKMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVIDVTTLCEVAV |
Ga0181572_102563241 | 3300018049 | Salt Marsh | NGESLVILSDGDPVDEVPVEFQGDVIDVTTICEVSA |
Ga0181572_106277491 | 3300018049 | Salt Marsh | YNVKFTNGESLVILADGDPVDEIPVEFQGDVVNVETICEVAFA |
Ga0181560_104226133 | 3300018413 | Salt Marsh | VIERKVGRQMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVVNVETICEVAFA |
Ga0181558_101987483 | 3300018417 | Salt Marsh | VFYYNLKFTNGESLVILADGDPVDEIPVEFQGDVIDVTTLCEVTV |
Ga0181567_103797105 | 3300018418 | Salt Marsh | GRKMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVVNVETICEVAVA |
Ga0181567_104060602 | 3300018418 | Salt Marsh | MFYYNVKFTNGESLVIMSDGDPVDEVPVEFQGDVVDVTTICEVSA |
Ga0181567_110155992 | 3300018418 | Salt Marsh | MFYYNVKFTNGESLVILADGDPVDEIPAEFQGDVIDVTTLCEVAV |
Ga0181563_101261664 | 3300018420 | Salt Marsh | MFYYNVKFTNGESLVILADGDPVEEIPVEFQGDVVNVETICEVAVA |
Ga0181592_103370851 | 3300018421 | Salt Marsh | FTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVSA |
Ga0181593_102891272 | 3300018423 | Salt Marsh | MFYYNVKFTNGESLVILSDGDPVNEVPVEFQGDVIDVTTLCEVAV |
Ga0181591_101237768 | 3300018424 | Salt Marsh | MFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTT |
Ga0181591_104456495 | 3300018424 | Salt Marsh | GRQMFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVAV |
Ga0181566_102566143 | 3300018426 | Salt Marsh | MFYYNVKFTNGESLVIMSDGDPVNEVPVECQGDVIDVTTICEVAV |
Ga0181566_103944281 | 3300018426 | Salt Marsh | RKVGRQMFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVAVA |
Ga0181566_110690721 | 3300018426 | Salt Marsh | GRKMFYYNVKFTNGETLVILSDGDPVDEVPVEFQGDVIDVTTICEVAV |
Ga0181562_101095332 | 3300019459 | Salt Marsh | MFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVIDVTTLCEVAV |
Ga0194021_10184111 | 3300019703 | Sediment | RKKGGRKMFYYNVKFTNGESLVILSEGDPTDEIPVEFQGDITDIQTICEVSA |
Ga0193973_10590491 | 3300019737 | Sediment | RKVGRQMFYYEVKFANGESTVILSAGDPVDEIPVEFQGDVVNVDTICEVAFA |
Ga0194002_10950432 | 3300019745 | Sediment | MFYYNVKFTNGESLVILSDGDPVNEVPVEFQGDVIDVATICEVSA |
Ga0181575_101662485 | 3300020055 | Salt Marsh | RKVGRKMFYYNVKFTNGESLVILADGDPVEEIPVEFQGDVIDVTTLCEVTV |
Ga0181575_101899122 | 3300020055 | Salt Marsh | MFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVVNVE |
Ga0181574_101012571 | 3300020056 | Salt Marsh | YILVIERKVGRKMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVIDVTTLCEVAV |
Ga0181574_102457421 | 3300020056 | Salt Marsh | TNGESLVILADGDPVDEIPVEFQGDVIDVTTLCEVAV |
Ga0181574_105121702 | 3300020056 | Salt Marsh | MFYYNVKFTNGESLVILSDGDPVNEVPVEFQGDVIDVTTICEVSA |
Ga0181574_107026622 | 3300020056 | Salt Marsh | MFYYNVKFTNGESLVIMSDGDPVDEVPVEFQGDVID |
Ga0181588_101427194 | 3300020168 | Salt Marsh | MFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVID |
Ga0213859_102770012 | 3300021364 | Seawater | MFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVVNVETICEVAFA |
Ga0206123_103452411 | 3300021365 | Seawater | KFTNGESLVILSDGDPVNEVPVEFQGDVIDVTTLCEVGV |
Ga0213860_101851853 | 3300021368 | Seawater | MFYYNVKFTNGETLVILSDGDPVNEVPVEFQGDVIDVTTLCEVAV |
Ga0196899_10652113 | 3300022187 | Aqueous | MFYYNVKFTNGESLVILADGDPVDEIPVEFQGEVVNVETICEVAFA |
Ga0196899_11208291 | 3300022187 | Aqueous | KFTNGESLVILSEGDPTDEIPAEFQGDITDIQTICEVSA |
(restricted) Ga0233433_104048602 | 3300022931 | Seawater | MFYYNVKFTNGESFVIMSDGNPVNEVPVEFQGDVIDVATICEVNV |
Ga0255781_103224521 | 3300022934 | Salt Marsh | TNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVSA |
Ga0255781_103801511 | 3300022934 | Salt Marsh | YYNIKFTNGESLVILADGDPVDEIPVEFQGDVVNVETICEVAFA |
Ga0255754_102098702 | 3300022939 | Salt Marsh | MFYYNVKFTNGESLVILADGDPVEEIPVEFQGDVIDVTTLCEVA |
Ga0255784_104996461 | 3300023108 | Salt Marsh | GIERKVGRKMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVVNVETICEVAVA |
(restricted) Ga0233432_100097638 | 3300023109 | Seawater | MVYLSHRKKGSRNMFYYEVKFTNGESLVILADGDPINDIPVEFQGDVVDVSTICEVTV |
(restricted) Ga0233432_102494262 | 3300023109 | Seawater | MFYYEVKFTNGESLVILADGDPVEDIPVEFQGDIVNVDTLCEVTV |
(restricted) Ga0233432_103263432 | 3300023109 | Seawater | MFYYNVKFTNGESFVIMTDGNPVNEVPVEFQGDVIDVTTICEVNV |
(restricted) Ga0233432_104211173 | 3300023109 | Seawater | MFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVTDVITLCEVNV |
Ga0255757_101306966 | 3300023117 | Salt Marsh | PRKKGGRKMFYYNVKFTNGETLVILSDGDPVDEVPVEFQGDVVDVTTICEVSA |
Ga0255776_102428131 | 3300023173 | Salt Marsh | MFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVV |
Ga0255776_106027021 | 3300023173 | Salt Marsh | RQMFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVVDVTTICEVSA |
Ga0255759_107753661 | 3300023178 | Salt Marsh | MFYYNVKFTNGESLVILADGDPVDESPVEFQGDVVNVETICEVAVA |
Ga0228653_10982913 | 3300024237 | Seawater | MFYYDIKFTNGQSTVILSAGDPVDEIPVEFQGDVVNVDTICEVAV |
(restricted) Ga0233442_10797511 | 3300024257 | Seawater | MFYYEVKFTNGESLVILADGDPINDIPVEFQGDVVDVSTICEVTV |
(restricted) Ga0233444_100425533 | 3300024264 | Seawater | MVYLSHRKKGSRNMFYYEVKFTNGESLVILADGDPVNDIPVEFQGDVVDVSTICEVTV |
(restricted) Ga0233447_10992251 | 3300024336 | Seawater | MFYYEVKFTNGESLVILADGDPVNDIPVEFQGDVVDVSTICEVTV |
Ga0208018_10046814 | 3300025057 | Marine | MFYYNVKFTNGESLVIMSDGDPVDEVPVEFQGDVIDVTTICEVSV |
Ga0208018_1063012 | 3300025057 | Marine | MFYYNVKFTNGESLVILSDGDPVDEVPVEFQGDVIDVTTLCEVAV |
Ga0208018_1154963 | 3300025057 | Marine | MFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVVNVETICEVTFA |
Ga0208149_10493252 | 3300025610 | Aqueous | MFYYNVKFTNGESLVILSEGDPTDEIPAEFQGDITDIQTICEVSA |
Ga0208150_11337473 | 3300025751 | Aqueous | MFYYEVKFANGESTVILADGDPVDEIPVEFQGEVVNVDTICEVMV |
Ga0208543_10348541 | 3300025810 | Aqueous | MFYYNVKFTNGETLVILSDGDPVDEVPVEFQGDVIDVATICEVSAXLTAFTELRK |
Ga0208645_12625021 | 3300025853 | Aqueous | ANGESLVILADGDPVDEIPVEFQGDVVNVDTICEVMV |
Ga0310343_106202781 | 3300031785 | Seawater | MFYYDVKFANGESTVILSAGDPVDEIPVEFQGDVVNVETICEVSPYREVGV |
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