NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F084122

Metagenome / Metatranscriptome Family F084122

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F084122
Family Type Metagenome / Metatranscriptome
Number of Sequences 112
Average Sequence Length 45 residues
Representative Sequence MFYYNVKFTNGESLVILSDGDPVDEVPVEFQGDVIDVTTICEVAV
Number of Associated Samples 69
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 66.96 %
% of genes near scaffold ends (potentially truncated) 40.18 %
% of genes from short scaffolds (< 2000 bps) 91.96 %
Associated GOLD sequencing projects 61
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (71.429 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh
(50.000 % of family members)
Environment Ontology (ENVO) Unclassified
(50.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(89.286 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 30.14%    Coil/Unstructured: 69.86%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.43
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 112 Family Scaffolds
PF02086MethyltransfD12 2.68
PF02945Endonuclease_7 1.79
PF00082Peptidase_S8 0.89

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 112 Family Scaffolds
COG0338DNA-adenine methylaseReplication, recombination and repair [L] 2.68
COG3392Adenine-specific DNA methylaseReplication, recombination and repair [L] 2.68


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A71.43 %
All OrganismsrootAll Organisms28.57 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001833|ACM24_1032947All Organisms → Viruses → Predicted Viral1438Open in IMG/M
3300001834|ACM2_1016049All Organisms → Viruses → Predicted Viral2218Open in IMG/M
3300001963|GOS2229_1016163All Organisms → Viruses → Predicted Viral1759Open in IMG/M
3300003894|Ga0063241_1020757All Organisms → Viruses → Predicted Viral3518Open in IMG/M
3300004097|Ga0055584_101824743Not Available626Open in IMG/M
3300004279|Ga0066605_10160520Not Available886Open in IMG/M
3300004279|Ga0066605_10332662Not Available554Open in IMG/M
3300005510|Ga0066825_10154098Not Available845Open in IMG/M
3300006026|Ga0075478_10038463All Organisms → Viruses → Predicted Viral1585Open in IMG/M
3300006026|Ga0075478_10058327Not Available1259Open in IMG/M
3300006026|Ga0075478_10143399Not Available748Open in IMG/M
3300006734|Ga0098073_1005356All Organisms → Viruses → Predicted Viral2606Open in IMG/M
3300006734|Ga0098073_1015309Not Available1211Open in IMG/M
3300006734|Ga0098073_1027460Not Available816Open in IMG/M
3300006734|Ga0098073_1028700Not Available791Open in IMG/M
3300006734|Ga0098073_1031089Not Available751Open in IMG/M
3300006734|Ga0098073_1037998Not Available662Open in IMG/M
3300006790|Ga0098074_1059211All Organisms → Viruses → Predicted Viral1058Open in IMG/M
3300006790|Ga0098074_1062694All Organisms → Viruses → Predicted Viral1023Open in IMG/M
3300006868|Ga0075481_10026525All Organisms → Viruses → Predicted Viral2266Open in IMG/M
3300006870|Ga0075479_10094448Not Available1244Open in IMG/M
3300006919|Ga0070746_10500253Not Available534Open in IMG/M
3300007345|Ga0070752_1097752Not Available1261Open in IMG/M
3300007345|Ga0070752_1118151Not Available1117Open in IMG/M
3300008012|Ga0075480_10384533Not Available694Open in IMG/M
3300010296|Ga0129348_1077503All Organisms → Viruses → Predicted Viral1182Open in IMG/M
3300010300|Ga0129351_1138066Not Available967Open in IMG/M
3300012953|Ga0163179_11019825Not Available723Open in IMG/M
3300013181|Ga0116836_1030300Not Available586Open in IMG/M
3300013722|Ga0116824_101789Not Available751Open in IMG/M
3300013722|Ga0116824_105695Not Available540Open in IMG/M
3300016747|Ga0182078_10960356Not Available654Open in IMG/M
3300017818|Ga0181565_10031280All Organisms → Viruses → Predicted Viral3916Open in IMG/M
3300017818|Ga0181565_10241296All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1229Open in IMG/M
3300017818|Ga0181565_10447910Not Available845Open in IMG/M
3300017824|Ga0181552_10112147All Organisms → Viruses → Predicted Viral1496Open in IMG/M
3300017824|Ga0181552_10343372Not Available726Open in IMG/M
3300017824|Ga0181552_10477011Not Available589Open in IMG/M
3300017949|Ga0181584_10711152Not Available600Open in IMG/M
3300017951|Ga0181577_10505284Not Available756Open in IMG/M
3300017951|Ga0181577_10627258Not Available660Open in IMG/M
3300017951|Ga0181577_10816888Not Available561Open in IMG/M
3300017957|Ga0181571_10943235Not Available506Open in IMG/M
3300017958|Ga0181582_10110085All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Changpingibacter → Changpingibacter yushuensis1973Open in IMG/M
3300017958|Ga0181582_10408726Not Available863Open in IMG/M
3300017968|Ga0181587_10190810Not Available1423Open in IMG/M
3300017969|Ga0181585_10204864All Organisms → Viruses → Predicted Viral1412Open in IMG/M
3300017969|Ga0181585_10532899Not Available785Open in IMG/M
3300017969|Ga0181585_11039162Not Available521Open in IMG/M
3300017986|Ga0181569_10162522Not Available1580Open in IMG/M
3300017986|Ga0181569_10375169Not Available976Open in IMG/M
3300017986|Ga0181569_10428516Not Available902Open in IMG/M
3300017986|Ga0181569_10557369Not Available770Open in IMG/M
3300018039|Ga0181579_10123004All Organisms → Viruses → Predicted Viral1597Open in IMG/M
3300018039|Ga0181579_10597881Not Available571Open in IMG/M
3300018039|Ga0181579_10637518Not Available548Open in IMG/M
3300018049|Ga0181572_10256324All Organisms → Viruses → Predicted Viral1122Open in IMG/M
3300018049|Ga0181572_10627749Not Available651Open in IMG/M
3300018413|Ga0181560_10422613Not Available610Open in IMG/M
3300018417|Ga0181558_10198748All Organisms → Viruses → Predicted Viral1151Open in IMG/M
3300018418|Ga0181567_10379710Not Available938Open in IMG/M
3300018418|Ga0181567_10406060Not Available902Open in IMG/M
3300018418|Ga0181567_11015599Not Available517Open in IMG/M
3300018420|Ga0181563_10126166All Organisms → Viruses → Predicted Viral1639Open in IMG/M
3300018421|Ga0181592_10337085All Organisms → Viruses → Predicted Viral1081Open in IMG/M
3300018423|Ga0181593_10289127All Organisms → Viruses → Predicted Viral1257Open in IMG/M
3300018424|Ga0181591_10123776All Organisms → Viruses → Predicted Viral2094Open in IMG/M
3300018424|Ga0181591_10445649Not Available954Open in IMG/M
3300018426|Ga0181566_10256614All Organisms → Viruses → Predicted Viral1276Open in IMG/M
3300018426|Ga0181566_10394428Not Available985Open in IMG/M
3300018426|Ga0181566_11069072Not Available541Open in IMG/M
3300019459|Ga0181562_10109533Not Available1557Open in IMG/M
3300019703|Ga0194021_1018411Not Available686Open in IMG/M
3300019737|Ga0193973_1059049Not Available538Open in IMG/M
3300019745|Ga0194002_1095043Not Available518Open in IMG/M
3300020055|Ga0181575_10166248Not Available1319Open in IMG/M
3300020055|Ga0181575_10189912All Organisms → Viruses → Predicted Viral1213Open in IMG/M
3300020056|Ga0181574_10101257Not Available1959Open in IMG/M
3300020056|Ga0181574_10245742All Organisms → Viruses → Predicted Viral1119Open in IMG/M
3300020056|Ga0181574_10512170Not Available670Open in IMG/M
3300020056|Ga0181574_10702662Not Available528Open in IMG/M
3300020168|Ga0181588_10142719All Organisms → Viruses → Predicted Viral1180Open in IMG/M
3300021364|Ga0213859_10277001Not Available763Open in IMG/M
3300021365|Ga0206123_10345241Not Available624Open in IMG/M
3300021368|Ga0213860_10185185Not Available918Open in IMG/M
3300022187|Ga0196899_1065211All Organisms → Viruses → Predicted Viral1150Open in IMG/M
3300022187|Ga0196899_1120829Not Available755Open in IMG/M
(restricted) 3300022931|Ga0233433_10404860Not Available535Open in IMG/M
3300022934|Ga0255781_10322452Not Available690Open in IMG/M
3300022934|Ga0255781_10380151Not Available608Open in IMG/M
3300022939|Ga0255754_10209870Not Available974Open in IMG/M
3300023108|Ga0255784_10499646Not Available555Open in IMG/M
(restricted) 3300023109|Ga0233432_10009763Not Available7804Open in IMG/M
(restricted) 3300023109|Ga0233432_10249426Not Available850Open in IMG/M
(restricted) 3300023109|Ga0233432_10326343Not Available698Open in IMG/M
(restricted) 3300023109|Ga0233432_10421117Not Available578Open in IMG/M
3300023117|Ga0255757_10130696All Organisms → Viruses → Predicted Viral1440Open in IMG/M
3300023173|Ga0255776_10242813Not Available1065Open in IMG/M
3300023173|Ga0255776_10602702Not Available534Open in IMG/M
3300023178|Ga0255759_10775366Not Available519Open in IMG/M
3300024237|Ga0228653_1098291Not Available628Open in IMG/M
(restricted) 3300024257|Ga0233442_1079751Not Available929Open in IMG/M
(restricted) 3300024264|Ga0233444_10042553All Organisms → Viruses → Predicted Viral2817Open in IMG/M
(restricted) 3300024336|Ga0233447_1099225Not Available856Open in IMG/M
3300025057|Ga0208018_100468Not Available10508Open in IMG/M
3300025057|Ga0208018_106301All Organisms → Viruses → Predicted Viral1863Open in IMG/M
3300025057|Ga0208018_115496Not Available966Open in IMG/M
3300025610|Ga0208149_1049325All Organisms → Viruses → Predicted Viral1093Open in IMG/M
3300025751|Ga0208150_1133747Not Available794Open in IMG/M
3300025810|Ga0208543_1034854All Organisms → Viruses → Predicted Viral1261Open in IMG/M
3300025853|Ga0208645_1262502Not Available567Open in IMG/M
3300031785|Ga0310343_10620278Not Available805Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh50.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine13.39%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous13.39%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater7.14%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment2.68%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater2.68%
Marine PlanktonEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton1.79%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.79%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.79%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.89%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.89%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.89%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.89%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.89%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.89%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001833Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM24, ROCA_DNA012_0.2um_2lEnvironmentalOpen in IMG/M
3300001834Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM2, ROCA_DNA019_0.2um_2gEnvironmentalOpen in IMG/M
3300001963Marine microbial communities from Nags Head, North Carolina, USA - GS013EnvironmentalOpen in IMG/M
3300003894Marine microbial communities from the northern Gulf of Mexico hypoxic zone - Cultivation independent assessmentEnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004279Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10mEnvironmentalOpen in IMG/M
3300005510Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45EnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006734Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaGEnvironmentalOpen in IMG/M
3300006790Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaGEnvironmentalOpen in IMG/M
3300006868Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006870Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300007345Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30EnvironmentalOpen in IMG/M
3300008012Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300010296Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNAEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300012953Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 MetagenomeEnvironmentalOpen in IMG/M
3300013181Marine hypoxic microbial communities from the Gulf of Mexico, USA - 9m_Station6_GOM_MetagenomeEnvironmentalOpen in IMG/M
3300013722Marine hypoxic microbial communities from the Gulf of Mexico, USA - 2m_Station4_GOM_MetagenomeEnvironmentalOpen in IMG/M
3300016747Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071409BT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017818Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017824Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017949Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017957Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017958Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017968Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017969Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017986Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018039Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071402CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018049Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018413Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011509CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018417Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018418Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018421Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018423Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018424Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018426Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019459Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019703Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_7-8_MGEnvironmentalOpen in IMG/M
3300019737Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_9-10_MGEnvironmentalOpen in IMG/M
3300019745Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLT_8-9_MGEnvironmentalOpen in IMG/M
3300020055Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101411CT metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020056Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101410AT metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020168Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409BT metaG (spades assembly)EnvironmentalOpen in IMG/M
3300021364Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304EnvironmentalOpen in IMG/M
3300021365Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1EnvironmentalOpen in IMG/M
3300021368Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550EnvironmentalOpen in IMG/M
3300022187Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)EnvironmentalOpen in IMG/M
3300022931 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MGEnvironmentalOpen in IMG/M
3300022934Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaGEnvironmentalOpen in IMG/M
3300022939Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaGEnvironmentalOpen in IMG/M
3300023108Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaGEnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300023117Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaGEnvironmentalOpen in IMG/M
3300023173Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaGEnvironmentalOpen in IMG/M
3300023178Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaGEnvironmentalOpen in IMG/M
3300024237Seawater microbial communities from Monterey Bay, California, United States - 65DEnvironmentalOpen in IMG/M
3300024257 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_150_MGEnvironmentalOpen in IMG/M
3300024264 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MGEnvironmentalOpen in IMG/M
3300024336 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_135_MGEnvironmentalOpen in IMG/M
3300025057Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025610Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025751Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300031785Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MGEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
ACM24_103294713300001833Marine PlanktonMFYYEVKFANGESTVILSAGDPVDEIPVEFQGDVTNVDTICEVSPYREVGV*
ACM2_101604953300001834Marine PlanktonMFYYEVKFANGESTVILSAGDPVDEIPVEFQGDVTNVETICEVSPYREVGV*
GOS2229_101616323300001963MarineMFYYNVKFTNGESLVIMSDGDPVNEVPVEFQSDVIDVTTICEVSV*
Ga0063241_102075743300003894MarineMFYYNVKFTNGESLVILSDGDPVDEVPVEFQGDVIDVTTICEVTV*
Ga0055584_10182474313300004097Pelagic MarineVFYYNLKFINGESLVILSAGDPVDEIPVEFQGDVVNVDTVCEVTV*
Ga0066605_1016052013300004279MarineMFYYNIKFTNGEDLVIMTDGDPVNEVPVEFQGDVTDVATICEVSV*
Ga0066605_1033266223300004279MarineMFYYEVKFTNGESLVILADGDPVDEIPVEFQGDVINVDTLFEVAV*
Ga0066825_1015409833300005510MarineMFYYNVKFTNGESLVIMSDGDPVDEVPVEFQGDVVDVTTICEVAV*
Ga0075478_1003846353300006026AqueousMFYYNVKFTNGESLVILSDGDPVNEVPVEFQGDVIDVTTLCEVAV*
Ga0075478_1005832743300006026AqueousMFYYNVKFTNGESLVILSEGDPTDEIPAEFQGDITDIQTICEVSA*
Ga0075478_1014339923300006026AqueousMFYYNVKFTNGESLVILADGDPVDEIPVEFQGEVVNVETICEVAFA*
Ga0098073_100535633300006734MarineMFYYNVKFTNGESLVILSDGDPVDEVPVEFQGDVIDVTTLCEVAV*
Ga0098073_101530923300006734MarineMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVVNVETICEVTFA*
Ga0098073_102746043300006734MarineVGRQMFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVTV*
Ga0098073_102870033300006734MarineMFYYNVKFTNGESLVIMSDGDPVDEVPVEFQGDVIDVTTICEVSV*
Ga0098073_103108943300006734MarineGRQMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVIDVTTLCEVAV*
Ga0098073_103799823300006734MarineMFYYNVKFTNGESLVILADGDPVDEIPAEFQGDVIDVTTLCEVAV*
Ga0098074_105921113300006790MarineMFYYNVKFTNGETLVIMSDGDPVNEVPVEFQGDVIDVTTICEVAV*
Ga0098074_106269413300006790MarineNVKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVTV*
Ga0075481_1002652573300006868AqueousMFYYNVKFTNGETLVILSDGDPVDEVPVEFQGDVIDVATICEVSA*
Ga0075479_1009444853300006870AqueousMFYYEVKFANGESTVILADGDPVDEIPVEFQGEVVNVDTICEVMV*
Ga0070746_1050025323300006919AqueousMFYYNVKFANGESLVILADGDPVDEIPVEFQGEVVNVETICEVAFA*
Ga0070752_109775233300007345AqueousMFYYNVKFTNGETLVILSDGDPVNEVPVEFQGDVIDVTTLCEVAV*
Ga0070752_111815113300007345AqueousRKKGGRKMFYYNVKFTNGETLVILSDGDPVDEVPVEFQGDVIDVATICEVSA*
Ga0075480_1038453313300008012AqueousFTNGESLVILSDGDPVNEVPVEFQGDVLDVTTICEVSA*
Ga0129348_107750313300010296Freshwater To Marine Saline GradientMFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVLDVTTICEVAV*
Ga0129351_113806633300010300Freshwater To Marine Saline GradientMFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVAV*
Ga0163179_1101982523300012953SeawaterMFYYEVKFANGERTVVLSAGDPVDEIPVEFQGDVTNVDTICEVSPYREVRV*
Ga0116836_103030013300013181MarineMFYYEVKFANGESTVILSAGDPVDEVPVEFQGDVVNVDTICEVSPYREVGV*
Ga0116824_10178933300013722MarineMFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVSV*
Ga0116824_10569523300013722MarineMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVIDVTTLCEVAV*
Ga0182078_1096035613300016747Salt MarshRKVGRKMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVIDVTTLCEVAV
Ga0181565_10031280123300017818Salt MarshMFYYNVKFTNGESLVILSDGDPVDEVPVEFQGDVIDVTTICEVAV
Ga0181565_1024129613300017818Salt MarshERKVGRKMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVVNVETICEVAFA
Ga0181565_1044791023300017818Salt MarshMFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVSA
Ga0181552_1011214733300017824Salt MarshMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVVNVETICEVAVA
Ga0181552_1034337233300017824Salt MarshMFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVAV
Ga0181552_1047701113300017824Salt MarshGESLVILADGDPVDEIPVEFQGDVVNVETICEVAFA
Ga0181584_1071115223300017949Salt MarshMFYYNVKFTNGETLVILSDGDPVDEVPVEFQGDVVDVTTICEVSA
Ga0181577_1050528423300017951Salt MarshMFYYNVKFANGESLVILSDGDPVDEVPVEFQGDVIDVTTICEVSA
Ga0181577_1062725813300017951Salt MarshMFYYNVKFTNGESLVILSDGDPVDEVPVEFQGDVIDVTTI
Ga0181577_1081688823300017951Salt MarshMFYYNVKFTNGESLVILADGDPVEEIPVEFQGDVVNVETICEVAFA
Ga0181571_1094323523300017957Salt MarshMFYYNVKFTHGESLVILADGDRVDEIPAEFQGDVIDVTT
Ga0181582_1011008513300017958Salt MarshMFYYNVKFTNGESLVILSDGDPVDEVPVEFQGDVVDVTTICEVSA
Ga0181582_1040872633300017958Salt MarshMFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGEVIDVTTICEVAV
Ga0181587_1019081033300017968Salt MarshMFYYNVKFTNGETLVILSDGDPVNEVPVEFQGDVIDVTTICEVSA
Ga0181585_1020486433300017969Salt MarshMFYYNVKFTNGESLVILADGDPVEEIPVEFQGDVIDVTTLCEVAV
Ga0181585_1053289913300017969Salt MarshIERKVGRKMFYYNVKFTNGESLVILADGDPVDEIPAEFQGDVIDVTTLCEVAV
Ga0181585_1103916233300017969Salt MarshGESLVILADGDPVDEIPVEFQGDVIDVTTLCEVAV
Ga0181569_1016252213300017986Salt MarshIERKVGRKMFYYNVKFTNGESLVILADGDPVEEIPVEFQGDVVNVETICEVAFA
Ga0181569_1037516923300017986Salt MarshMFYYNVKFTNGESLVIMSDGDPTDEIPVEFQGDITDIQTICEVSA
Ga0181569_1042851613300017986Salt MarshMFYYNVKFTNGETLVILSDGDPVDEVPVEFQGDVVDVTTICEVTV
Ga0181569_1055736913300017986Salt MarshKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVSA
Ga0181579_1012300413300018039Salt MarshMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVIDV
Ga0181579_1059788113300018039Salt MarshMFYYNVKFTNGESLVIMSAGDPTDEIPVEFQGDITDIQTICEVSA
Ga0181579_1063751813300018039Salt MarshGRKMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVIDVTTLCEVAV
Ga0181572_1025632413300018049Salt MarshNGESLVILSDGDPVDEVPVEFQGDVIDVTTICEVSA
Ga0181572_1062774913300018049Salt MarshYNVKFTNGESLVILADGDPVDEIPVEFQGDVVNVETICEVAFA
Ga0181560_1042261333300018413Salt MarshVIERKVGRQMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVVNVETICEVAFA
Ga0181558_1019874833300018417Salt MarshVFYYNLKFTNGESLVILADGDPVDEIPVEFQGDVIDVTTLCEVTV
Ga0181567_1037971053300018418Salt MarshGRKMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVVNVETICEVAVA
Ga0181567_1040606023300018418Salt MarshMFYYNVKFTNGESLVIMSDGDPVDEVPVEFQGDVVDVTTICEVSA
Ga0181567_1101559923300018418Salt MarshMFYYNVKFTNGESLVILADGDPVDEIPAEFQGDVIDVTTLCEVAV
Ga0181563_1012616643300018420Salt MarshMFYYNVKFTNGESLVILADGDPVEEIPVEFQGDVVNVETICEVAVA
Ga0181592_1033708513300018421Salt MarshFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVSA
Ga0181593_1028912723300018423Salt MarshMFYYNVKFTNGESLVILSDGDPVNEVPVEFQGDVIDVTTLCEVAV
Ga0181591_1012377683300018424Salt MarshMFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTT
Ga0181591_1044564953300018424Salt MarshGRQMFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVAV
Ga0181566_1025661433300018426Salt MarshMFYYNVKFTNGESLVIMSDGDPVNEVPVECQGDVIDVTTICEVAV
Ga0181566_1039442813300018426Salt MarshRKVGRQMFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVAVA
Ga0181566_1106907213300018426Salt MarshGRKMFYYNVKFTNGETLVILSDGDPVDEVPVEFQGDVIDVTTICEVAV
Ga0181562_1010953323300019459Salt MarshMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVIDVTTLCEVAV
Ga0194021_101841113300019703SedimentRKKGGRKMFYYNVKFTNGESLVILSEGDPTDEIPVEFQGDITDIQTICEVSA
Ga0193973_105904913300019737SedimentRKVGRQMFYYEVKFANGESTVILSAGDPVDEIPVEFQGDVVNVDTICEVAFA
Ga0194002_109504323300019745SedimentMFYYNVKFTNGESLVILSDGDPVNEVPVEFQGDVIDVATICEVSA
Ga0181575_1016624853300020055Salt MarshRKVGRKMFYYNVKFTNGESLVILADGDPVEEIPVEFQGDVIDVTTLCEVTV
Ga0181575_1018991223300020055Salt MarshMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVVNVE
Ga0181574_1010125713300020056Salt MarshYILVIERKVGRKMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVIDVTTLCEVAV
Ga0181574_1024574213300020056Salt MarshTNGESLVILADGDPVDEIPVEFQGDVIDVTTLCEVAV
Ga0181574_1051217023300020056Salt MarshMFYYNVKFTNGESLVILSDGDPVNEVPVEFQGDVIDVTTICEVSA
Ga0181574_1070266223300020056Salt MarshMFYYNVKFTNGESLVIMSDGDPVDEVPVEFQGDVID
Ga0181588_1014271943300020168Salt MarshMFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVID
Ga0213859_1027700123300021364SeawaterMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVVNVETICEVAFA
Ga0206123_1034524113300021365SeawaterKFTNGESLVILSDGDPVNEVPVEFQGDVIDVTTLCEVGV
Ga0213860_1018518533300021368SeawaterMFYYNVKFTNGETLVILSDGDPVNEVPVEFQGDVIDVTTLCEVAV
Ga0196899_106521133300022187AqueousMFYYNVKFTNGESLVILADGDPVDEIPVEFQGEVVNVETICEVAFA
Ga0196899_112082913300022187AqueousKFTNGESLVILSEGDPTDEIPAEFQGDITDIQTICEVSA
(restricted) Ga0233433_1040486023300022931SeawaterMFYYNVKFTNGESFVIMSDGNPVNEVPVEFQGDVIDVATICEVNV
Ga0255781_1032245213300022934Salt MarshTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVSA
Ga0255781_1038015113300022934Salt MarshYYNIKFTNGESLVILADGDPVDEIPVEFQGDVVNVETICEVAFA
Ga0255754_1020987023300022939Salt MarshMFYYNVKFTNGESLVILADGDPVEEIPVEFQGDVIDVTTLCEVA
Ga0255784_1049964613300023108Salt MarshGIERKVGRKMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVVNVETICEVAVA
(restricted) Ga0233432_1000976383300023109SeawaterMVYLSHRKKGSRNMFYYEVKFTNGESLVILADGDPINDIPVEFQGDVVDVSTICEVTV
(restricted) Ga0233432_1024942623300023109SeawaterMFYYEVKFTNGESLVILADGDPVEDIPVEFQGDIVNVDTLCEVTV
(restricted) Ga0233432_1032634323300023109SeawaterMFYYNVKFTNGESFVIMTDGNPVNEVPVEFQGDVIDVTTICEVNV
(restricted) Ga0233432_1042111733300023109SeawaterMFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVTDVITLCEVNV
Ga0255757_1013069663300023117Salt MarshPRKKGGRKMFYYNVKFTNGETLVILSDGDPVDEVPVEFQGDVVDVTTICEVSA
Ga0255776_1024281313300023173Salt MarshMFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVV
Ga0255776_1060270213300023173Salt MarshRQMFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVVDVTTICEVSA
Ga0255759_1077536613300023178Salt MarshMFYYNVKFTNGESLVILADGDPVDESPVEFQGDVVNVETICEVAVA
Ga0228653_109829133300024237SeawaterMFYYDIKFTNGQSTVILSAGDPVDEIPVEFQGDVVNVDTICEVAV
(restricted) Ga0233442_107975113300024257SeawaterMFYYEVKFTNGESLVILADGDPINDIPVEFQGDVVDVSTICEVTV
(restricted) Ga0233444_1004255333300024264SeawaterMVYLSHRKKGSRNMFYYEVKFTNGESLVILADGDPVNDIPVEFQGDVVDVSTICEVTV
(restricted) Ga0233447_109922513300024336SeawaterMFYYEVKFTNGESLVILADGDPVNDIPVEFQGDVVDVSTICEVTV
Ga0208018_100468143300025057MarineMFYYNVKFTNGESLVIMSDGDPVDEVPVEFQGDVIDVTTICEVSV
Ga0208018_10630123300025057MarineMFYYNVKFTNGESLVILSDGDPVDEVPVEFQGDVIDVTTLCEVAV
Ga0208018_11549633300025057MarineMFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVVNVETICEVTFA
Ga0208149_104932523300025610AqueousMFYYNVKFTNGESLVILSEGDPTDEIPAEFQGDITDIQTICEVSA
Ga0208150_113374733300025751AqueousMFYYEVKFANGESTVILADGDPVDEIPVEFQGEVVNVDTICEVMV
Ga0208543_103485413300025810AqueousMFYYNVKFTNGETLVILSDGDPVDEVPVEFQGDVIDVATICEVSAXLTAFTELRK
Ga0208645_126250213300025853AqueousANGESLVILADGDPVDEIPVEFQGDVVNVDTICEVMV
Ga0310343_1062027813300031785SeawaterMFYYDVKFANGESTVILSAGDPVDEIPVEFQGDVVNVETICEVSPYREVGV


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.