Scaffold Ga0208018_100111

Overview

Basic Information

• Taxon OID: 3300025057
• Scaffold ID: Ga0208018_100111
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30357
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (31.34%)
• Novel Protein Genes: 17
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Associated Families: 17

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F002333	Metagenome	569	Y
F002985	Metagenome / Metatranscriptome	515	Y
F003687	Metagenome / Metatranscriptome	473	Y
F013517	Metagenome / Metatranscriptome	270	Y
F015587	Metagenome	253	Y
F019817	Metagenome	227	Y
F020341	Metagenome	224	Y
F025982	Metagenome / Metatranscriptome	199	Y
F040073	Metagenome	162	Y
F042290	Metagenome / Metatranscriptome	158	Y
F055663	Metagenome	138	Y
F087066	Metagenome	110	Y
F103180	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208018_10011115	F019817	N/A	MLTAKPPVGLRITQRNLYQYFLAHKKKYKNTPCYVPRLPMQNSRLDQYLQALVRLEEYGLISVDRSSDNYTGWIITDP
Ga0208018_10011118	F001165	N/A	MTTPNTPRIPDSLDMERLQAMQLVAKMKESAEKHGIGFIGGFISPNGEKFVMTNMTDEDDINKLMPKDLK
Ga0208018_10011120	F001120	N/A	MTKDKSPINFDKTIAGFNITENGIKSYTKSIKLGPFQLTLNARESGVRGSISIPGTGLSKRGIRIL
Ga0208018_10011123	F001807	GGAGG	MTVLAIEDAFFTDNHVTVTAVVDEMRLLYRATRFEPEEWAPALCITTIQLDPEEPIPLDEDGFCSYLDHLDPDWQILDTSDEQ
Ga0208018_10011124	F103180	N/A	MIGFSIEFKRWYFVLRGPKGRVYLATGFAKRMPVMTPTGTYTLEDCVGTWPGDEADQELLDTLKTTR
Ga0208018_10011131	F087066	AGGAG	MNDLQKAFLRGACITIFGFAVTSLLAAIFLCNGCTPDEPKDTSKFEVIAEYEECNVIRYTDPTTRWQYFLKCP
Ga0208018_10011134	F042290	N/A	MTLTYRGVKYDKQEQAAKDKAWWNLAHRPWLSLKYRNLCYFPYVTGGQIK
Ga0208018_10011136	F055663	N/A	MEDFFNLKISQKQIVCPKHGTHKHHISSDIEGYEGNWCMLCWLESLGPSLPLVDIEIQ
Ga0208018_10011138	F020341	N/A	MKGFNTTKQTTRSSSYWVASYTKDNEDEPLGIHKKVLSYAPGQDKESLMTKYCHSLMKLNPHVWEVLVHQGPSKIPDHGDQIVIRLSRERFKGCSQLT
Ga0208018_10011141	F002985	N/A	MSYVIACWRWGTPHAITANKESNKFELIPLDSDVALNKIFSHPYRAGAQQILTWINDNDEDLSSKELQVCDKAQFRK
Ga0208018_10011147	F040073	N/A	MLQFEAGPEEMFWQEKMIRQINDCTSMDELKEIAVLLTKIATTRQIAIKGLVKDAMDLMQGQFSHQLPSQSQ
Ga0208018_10011149	F002333	N/A	MSTQLQTELNAAQAAIYTRTNLGRAFQDFDDTDIGGIYLRSDDCIVVRRDGSEQAYNREVVKVAYTNHTHRLKDFFSYLGPNYRGPSIWHNNAYVLFKGWNYSHALGHLSSHAKLQAHWADKFIHVSEQQKLVHLLQSDQTDLGHLVAPDGMRLQDRPINLDGDMEGEQVPVMGEPWCSCGSYQRQLSNLSDFEAEITGFKPWCIHLSWFNKYRELLCKRTEARNASPSGTPEKCVAWWYAPPADHVSDGRFVLLYTNHGAQAPLTHWRTYKQNEVFTQHDAWDLFFNMCDAGYVPFPGVALPQLKSAIKKQ
Ga0208018_10011152	F013517	N/A	MFESLFATLLPVMKDLLWAAAGVLLTYALNKFQAHFN
Ga0208018_10011153	F001018	N/A	MTTQITQAKLKDLNIIKLYEHYAALEKSLPLLTPESQDLAKAELEACANLRSEKVDRIHYAMAAHEDALERIKKEGELITQAKRHHESQLKSLKGLLNYLRRVLPLDSNKITGRNYQFTLVKKKDLTVEITSDPEFWHTEERRRYCIEETVTTTKRVVLRSISGEVLSDRTEPKTTTKVLPNLDAIRSAYQEGQQLPSGVKVIQEYSVRTKRIYGEPRMEMASSEYPGFVLPEDSSAD
Ga0208018_10011154	F025982	N/A	MSCHEHALKDFDLQLEMNGLQMDMLMDGDRVCSYKIDEYDDLEEKKLKLLLGKRFHQNAANAYWYHIQRDKAAK
Ga0208018_1001117	F015587	N/A	MTKLNIRKNIASALISAATAVDNAKVPTKASIGAGLHDIRCRAAALVMPNDMAFVLTPKNKI
Ga0208018_1001118	F003687	N/A	MNYQAVEHLLTQDARLLARRDSPVIDQEIESARQAALDLYFQWQDGMKEFKDLMPFVAILQRKVDLNRDLLRWERKHEDQI