Scaffold Ga0208018_100034

Overview

Basic Information

• Taxon OID: 3300025057
• Scaffold ID: Ga0208018_100034
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 75991
• Total Scaffold Genes: 121
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (38.84%)
• Novel Protein Genes: 23
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (21.74%)
• Associated Families: 23

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000973	Metagenome / Metatranscriptome	817	Y
F001018	Metagenome / Metatranscriptome	804	Y
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F002985	Metagenome / Metatranscriptome	515	Y
F003687	Metagenome / Metatranscriptome	473	Y
F003889	Metagenome	463	Y
F004278	Metagenome	445	Y
F007026	Metagenome	359	Y
F008128	Metagenome / Metatranscriptome	338	Y
F013517	Metagenome / Metatranscriptome	270	Y
F015587	Metagenome	253	Y
F020160	Metagenome	225	Y
F020342	Metagenome / Metatranscriptome	224	Y
F029405	Metagenome / Metatranscriptome	188	Y
F030408	Metagenome	185	Y
F044444	Metagenome / Metatranscriptome	154	Y
F058089	Metagenome	135	Y
F067649	Metagenome	125	Y
F087065	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208018_100034105	F008128	N/A	MEPVYVPKLTVSFAVDLELEYNSFGGKTADEIAVALQDDLDDLLFELGHVTGVFTSCTSIQFDD
Ga0208018_100034108	F001018	N/A	MSQITQTKLGKLNVFDLYKHYAALEQSLPLLTPESQELAKAELETCANLRSEKIDRIYYAMASHEDALERIKKENDLIVQAKRHHESQLRSLKNLLSYLRRVLPQDSNKITGRNYQFTLVKKKELTIEISSDPEFWHTKERELYCVAEEVTTTKRVVLRSMSGEVLSDRTEPSTKTKILPNIDAIRSAYQNGQQLPTGVKVTQEYSARSKRIYAEPRMELETSEYPGELLPED
Ga0208018_100034109	F013517	N/A	MFETLLATVLPVMKDLLWAAAGMLLTYMLNKIQSQFN
Ga0208018_10003411	F029405	N/A	MKDFNFIDEQRNADFLDAMSDIAYEQEEAMRESEAFEWDGIEEISSAERNACDHYNERYVIND
Ga0208018_100034110	F002738	N/A	MSIDSYGLSSEQYTEFFHKNVRFAAKLYLDTCNILTTEGVGNIDFKTVLDMYQEAVYTTNDDCRRYQKANNPEALKEATADIFAISPTREELMAEVQSLSAKVDGLTDYFAESLEAKNKGLSGLVD
Ga0208018_100034112	F044444	N/A	MTDDILEYARQLATQPMKIGHLRYELDIPEDTHWELVKLAADLKMHQEDYAINVLIGHVESELDRKAQD
Ga0208018_100034113	F002333	N/A	MNTQTQLELNAAQACIYTRTNITRAYQDFDDSEITGIYLRDDNCIVVRRDGTEQTYSRDLIKTAYSSYTHRLKDFFSYLGPNYRGPSVWHNNAYILFKGWNYSHALGHLTSNAQLQNHWADKFIHVSDPAKVTALLQSDQTDIGHLVAPDGMRLPNRAINLDRELDDSAEQEPVSSEPTCSCGSFQRQLNNLSTFQEEVQGFRPWCIHLTWFAKYRELLCKRTEVRNASPSGTPDKCVAWWYAPPTDHTSNGRFVLLHTKSGAQAPLTHWRTYKPKEVFTQHDAWDLFFNMMEAGYTPFPGTSLPQLKSAIKK
Ga0208018_100034117	F058089	GAGG	MSTQAEDQFTLLFEDGKRKVLHQFQAIGTDEIVDEMIQFLRGIGHLELNIIERMNEISKQYLELYNSNKEVFLELQQDELNDVE
Ga0208018_10003412	F030408	N/A	MAFTVALVADRSGRYAHVWGVPRSWNHFVDQLEDAGCEVIEDQTEDWDGCTRDEVAEDCLTVHQLLHDTDFIPH
Ga0208018_100034120	F002985	N/A	MSYVIACWRWGTPHAITANNETNKFELIPLDSDVALNKIFSHPYRAGAQQILTWINSNDEDLACKELSIQDESRFRK
Ga0208018_10003414	F003687	GGA	MTPKAVEHLLIQDARLLARRDAPAIDQELEAQRQAALELFFEWQDGMRQFQDLVPFVAIVQRKVDLNRDLLRWERRQLEQD
Ga0208018_10003415	F015587	N/A	MTALHIRKNIAALLVNTAAAVENAKLPTKDAARTKLNEYRLRAAALMMPNDMAFVITPKNNI
Ga0208018_10003418	F087065	N/A	MQGQQAKRWQYDWRQKTGERPTESNAKLFHSYVEMAYELLEDFSSAEFIYSELRQICQPQYLFQVVCDMRGEKLSMRIYTTEDGLKCVMIHKV
Ga0208018_1000342	F001807	GAGG	MTVLAIEDTSFTDTHVTVTAVVDEMRLLYRATRFEPEEWAPALCQTTIELDPGEPIPLDEDGFCAYLDNLDPQWQLLDTSVGDPD
Ga0208018_1000343	F020342	N/A	MSAVTDNINMFDRINLAACARRRASDNVLDSTRFEGEYDTARLWMKYRLVKYSTYSYIED
Ga0208018_10003437	F003889	N/A	VGPEFFAIGLTAIISAVTGGSWVANKILDRQQERIQNALSYTSSQKRRIDILEDQINRMPMEYVLKVDFLREIQEMHDNFREINNKLDKLMEKLLSK
Ga0208018_1000345	F001120	GGAG	MTKDKSPLNFDKTIAGFNVTERGIQSYTKSFQLGPFQLTLNARESGVRGSVSIPGTGLSKRNIKLF
Ga0208018_10003466	F000973	AGGA	MASFGIRKGLEDIAHELKGIRNILSSMWHSRYQDGETDLLNPEAFADEYISTEECGRRLGVSDQTIRNWIMLGRHNPQKGWTEGIHYVNINPNQSKKSVIRIPWNHLIQSFAKNKKSESSDFHKGVLYKSLNGNNQ
Ga0208018_1000347	F001165	N/A	MSNSNLPRIPDSLDMERLQAMQLVAKMKESADKYGIGFIGGFIAPNGEKFVMSNMDEEDSQALLPDDLK
Ga0208018_1000348	F007026	N/A	MAYPEINWKKNEYHQLQEVVNLLKAIQERESKRHQMDEHLTPHTADVVLEVIGMLEDEIDYDPTPNEPGEPPSTLDEMHTAAWKEHQEMHR
Ga0208018_10003481	F067649	N/A	MDIHVSVGEWMQTLQSLMSNAADGDCFCLPTTMHLHAFLILKEDFFSHRDFKVLVKQEGIHDQ
Ga0208018_10003482	F020160	N/A	MNRNPQSPMECRKRLAWTIACEQAVVTKEDAVAIYNRIMDDFNSIDKRNKYKKLESNKS
Ga0208018_10003483	F004278	N/A	MSSFFSSLVKYFIDWLKRLWFESKLKARLDMIELQNRVESELELEKQNKPIYIEHPIDPVLQPGESAKLGGAIELKAPWYTDEPQPPKSDGMP