Scaffold Ga0207905_1020312

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1020312
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1108
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC204P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009178	Metagenome	322	Y
F013705	Metagenome	269	N
F077796	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_10203122	F009178	AGGGGG	MTIDKNNEGAWRICENINGYLETKVYYFYTKKEAMKLFREHKKAIINQ
Ga0207905_10203124	F013705	AGG	MTNKLQNKIDELIKLEELHNIKEQYKQHEKTKGLYEQIDFKPIPQEIMDQCNNDWEGE
Ga0207905_10203125	F077796	GGA	MENQIPCDNCNWLENESKLIETFDNELLCSPCYIKKEFDTENEKTND